Gene : Pp3c1_35180 P. patens v3.3
Defline:  (1 of 2) PTHR12855:SF10 - DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 Genomic Order:  1689
Name:  ? Pp3c1_35180 Secondary Identifier:  ? PAC:32971918
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_35180 0.5kb upstream 0.5kb upstream 6130 true Chr01: 24705754-24711883 Physcomitrium patens
Pp3c1_35180 0.5kb upstream 0.5kb upstream 500 false Chr01: 24705754-24706253 Physcomitrium patens
Pp3c1_35180 0.5kb downstream 0.5kb downstream 6130 true Chr01: 24706254-24712383 Physcomitrium patens
Pp3c1_35180 0.5kb downstream 0.5kb downstream 500 false Chr01: 24711884-24712383 Physcomitrium patens
Pp3c1_35180 1.0kb upstream 1.0kb upstream 6630 true Chr01: 24705254-24711883 Physcomitrium patens
Pp3c1_35180 1.0kb upstream 1.0kb upstream 1000 false Chr01: 24705254-24706253 Physcomitrium patens
Pp3c1_35180 1.0kb downstream 1.0kb downstream 6630 true Chr01: 24706254-24712883 Physcomitrium patens
Pp3c1_35180 1.0kb downstream 1.0kb downstream 1000 false Chr01: 24711884-24712883 Physcomitrium patens
Pp3c1_35180 2.0kb upstream 2.0kb upstream 7630 true Chr01: 24704254-24711883 Physcomitrium patens
Pp3c1_35180 2.0kb upstream 2.0kb upstream 2000 false Chr01: 24704254-24706253 Physcomitrium patens
Pp3c1_35180 2.0kb downstream 2.0kb downstream 7630 true Chr01: 24706254-24713883 Physcomitrium patens
Pp3c1_35180 2.0kb downstream 2.0kb downstream 2000 false Chr01: 24711884-24713883 Physcomitrium patens
Pp3c1_35180 5.0kb upstream 5.0kb upstream 10630 true Chr01: 24701254-24711883 Physcomitrium patens
Pp3c1_35180 5.0kb upstream 5.0kb upstream 5000 false Chr01: 24701254-24706253 Physcomitrium patens
Pp3c1_35180 5.0kb downstream 5.0kb downstream 10630 true Chr01: 24706254-24716883 Physcomitrium patens
Pp3c1_35180 5.0kb downstream 5.0kb downstream 5000 false Chr01: 24711884-24716883 Physcomitrium patens
Pp3c1_35180 10.0kb upstream 10.0kb upstream 15630 true Chr01: 24696254-24711883 Physcomitrium patens
Pp3c1_35180 10.0kb upstream 10.0kb upstream 10000 false Chr01: 24696254-24706253 Physcomitrium patens
Pp3c1_35180 10.0kb downstream 10.0kb downstream 15630 true Chr01: 24706254-24721883 Physcomitrium patens
Pp3c1_35180 10.0kb downstream 10.0kb downstream 10000 false Chr01: 24711884-24721883 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429045 5275 Viridiplantae View MSA
121347026 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 107.424     High  
cufflinks 129.166     High  
cufflinks 144.221     High High
cufflinks 128.609     High  
cufflinks 81.675     High  
cufflinks 150.671     High High
cufflinks 108.452     High  
cufflinks 128.266     High  
cufflinks 166.865     High High
cufflinks 68.32     High Low
cufflinks 134.714     High  
cufflinks 81.353     High  
cufflinks 93.509     High  
cufflinks 70.293     High Low
cufflinks 73.201     High Low
cufflinks 147.439     High High
cufflinks 93.038     High  
cufflinks 130.002     High  
cufflinks 62.524     High Low
cufflinks 85.769     High  
cufflinks 152.075     High High
cufflinks 64.288     High Low
cufflinks 90.014     High  
cufflinks 140.664     High  
cufflinks 68.53     High Low
cufflinks 137.721     High  
cufflinks 114.72     High  
cufflinks 114.461     High  
cufflinks 139.003     High  
cufflinks 73.602     High Low

0 Strain