Gene : Pp3c1_35690 P. patens v3.3
Defline:  (1 of 1) PTHR20938:SF0 - INTEGRATOR COMPLEX SUBUNIT 4-RELATED Genomic Order:  1714
Name:  ? Pp3c1_35690 Secondary Identifier:  ? PAC:32967517
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_35690 0.5kb upstream 0.5kb upstream 5293 true Chr01: 25020774-25026066 Physcomitrium patens
Pp3c1_35690 0.5kb upstream 0.5kb upstream 500 false Chr01: 25020774-25021273 Physcomitrium patens
Pp3c1_35690 0.5kb downstream 0.5kb downstream 5293 true Chr01: 25021274-25026566 Physcomitrium patens
Pp3c1_35690 0.5kb downstream 0.5kb downstream 500 false Chr01: 25026067-25026566 Physcomitrium patens
Pp3c1_35690 1.0kb upstream 1.0kb upstream 5793 true Chr01: 25020274-25026066 Physcomitrium patens
Pp3c1_35690 1.0kb upstream 1.0kb upstream 1000 false Chr01: 25020274-25021273 Physcomitrium patens
Pp3c1_35690 1.0kb downstream 1.0kb downstream 5793 true Chr01: 25021274-25027066 Physcomitrium patens
Pp3c1_35690 1.0kb downstream 1.0kb downstream 1000 false Chr01: 25026067-25027066 Physcomitrium patens
Pp3c1_35690 2.0kb upstream 2.0kb upstream 6793 true Chr01: 25019274-25026066 Physcomitrium patens
Pp3c1_35690 2.0kb upstream 2.0kb upstream 2000 false Chr01: 25019274-25021273 Physcomitrium patens
Pp3c1_35690 2.0kb downstream 2.0kb downstream 6793 true Chr01: 25021274-25028066 Physcomitrium patens
Pp3c1_35690 2.0kb downstream 2.0kb downstream 2000 false Chr01: 25026067-25028066 Physcomitrium patens
Pp3c1_35690 5.0kb upstream 5.0kb upstream 9793 true Chr01: 25016274-25026066 Physcomitrium patens
Pp3c1_35690 5.0kb upstream 5.0kb upstream 5000 false Chr01: 25016274-25021273 Physcomitrium patens
Pp3c1_35690 5.0kb downstream 5.0kb downstream 9793 true Chr01: 25021274-25031066 Physcomitrium patens
Pp3c1_35690 5.0kb downstream 5.0kb downstream 5000 false Chr01: 25026067-25031066 Physcomitrium patens
Pp3c1_35690 10.0kb upstream 10.0kb upstream 14793 true Chr01: 25011274-25026066 Physcomitrium patens
Pp3c1_35690 10.0kb upstream 10.0kb upstream 10000 false Chr01: 25011274-25021273 Physcomitrium patens
Pp3c1_35690 10.0kb downstream 10.0kb downstream 14793 true Chr01: 25021274-25036066 Physcomitrium patens
Pp3c1_35690 10.0kb downstream 10.0kb downstream 10000 false Chr01: 25026067-25036066 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350116 5274 Embryophyte View MSA
123381584 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 89.986     High  
cufflinks 36.724     High Low
cufflinks 128.161     High  
cufflinks 42.453     High Low
cufflinks 118.748     High  
cufflinks 103.396     High  
cufflinks 89.172     High  
cufflinks 122.961     High  
cufflinks 121.131     High  
cufflinks 137.556     High High
cufflinks 140.98     High High
cufflinks 59.283     High Low
cufflinks 97.296     High  
cufflinks 126.713     High  
cufflinks 65.461     High  
cufflinks 75.505     High  
cufflinks 113.813     High  
cufflinks 88.032     High  
cufflinks 123.736     High  
cufflinks 118.263     High  
cufflinks 131.852     High  
cufflinks 167.888     High High
cufflinks 66.76     High  
cufflinks 60.561     High Low
cufflinks 99.36     High  
cufflinks 88.389     High  
cufflinks 36.999     High Low
cufflinks 82.765     High  
cufflinks 105.028     High  
cufflinks 86.276     High  

0 Strain