Gene : Pp3c1_37670 P. patens v3.3
Defline:  (1 of 24) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1816
Name:  ? Pp3c1_37670 Secondary Identifier:  ? PAC:32970719
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

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Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_37670 0.5kb upstream 0.5kb upstream 3944 true Chr01: 26102684-26106627 Physcomitrium patens
Pp3c1_37670 0.5kb upstream 0.5kb upstream 500 false Chr01: 26102684-26103183 Physcomitrium patens
Pp3c1_37670 0.5kb downstream 0.5kb downstream 3944 true Chr01: 26103184-26107127 Physcomitrium patens
Pp3c1_37670 0.5kb downstream 0.5kb downstream 500 false Chr01: 26106628-26107127 Physcomitrium patens
Pp3c1_37670 1.0kb upstream 1.0kb upstream 4444 true Chr01: 26102184-26106627 Physcomitrium patens
Pp3c1_37670 1.0kb upstream 1.0kb upstream 1000 false Chr01: 26102184-26103183 Physcomitrium patens
Pp3c1_37670 1.0kb downstream 1.0kb downstream 4444 true Chr01: 26103184-26107627 Physcomitrium patens
Pp3c1_37670 1.0kb downstream 1.0kb downstream 1000 false Chr01: 26106628-26107627 Physcomitrium patens
Pp3c1_37670 2.0kb upstream 2.0kb upstream 5444 true Chr01: 26101184-26106627 Physcomitrium patens
Pp3c1_37670 2.0kb upstream 2.0kb upstream 2000 false Chr01: 26101184-26103183 Physcomitrium patens
Pp3c1_37670 2.0kb downstream 2.0kb downstream 5444 true Chr01: 26103184-26108627 Physcomitrium patens
Pp3c1_37670 2.0kb downstream 2.0kb downstream 2000 false Chr01: 26106628-26108627 Physcomitrium patens
Pp3c1_37670 5.0kb upstream 5.0kb upstream 8444 true Chr01: 26098184-26106627 Physcomitrium patens
Pp3c1_37670 5.0kb upstream 5.0kb upstream 5000 false Chr01: 26098184-26103183 Physcomitrium patens
Pp3c1_37670 5.0kb downstream 5.0kb downstream 8444 true Chr01: 26103184-26111627 Physcomitrium patens
Pp3c1_37670 5.0kb downstream 5.0kb downstream 5000 false Chr01: 26106628-26111627 Physcomitrium patens
Pp3c1_37670 10.0kb upstream 10.0kb upstream 13444 true Chr01: 26093184-26106627 Physcomitrium patens
Pp3c1_37670 10.0kb upstream 10.0kb upstream 10000 false Chr01: 26093184-26103183 Physcomitrium patens
Pp3c1_37670 10.0kb downstream 10.0kb downstream 13444 true Chr01: 26103184-26116627 Physcomitrium patens
Pp3c1_37670 10.0kb downstream 10.0kb downstream 10000 false Chr01: 26106628-26116627 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344494 5274 Embryophyte View MSA
123380057 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.558        
cufflinks 0.436        
cufflinks 0.524        
cufflinks 0.641        
cufflinks 0.819       High
cufflinks 0.568        
cufflinks 0.315       Low
cufflinks 0.607        
cufflinks 0.594        
cufflinks 0.287       Low
cufflinks 0.268       Low
cufflinks 0.585        
cufflinks 0.618        
cufflinks 0.447        
cufflinks 0.668        
cufflinks 0.532        
cufflinks 0.527        
cufflinks 0.295       Low
cufflinks 0.545        
cufflinks 0.558        
cufflinks 0.581        
cufflinks 0.991       High
cufflinks 0.306       Low
cufflinks 0.211       Low
cufflinks 0.412        
cufflinks 0.685       High
cufflinks 0.619        
cufflinks 0.414        
cufflinks 0.375        
cufflinks 0.335       Low

0 Strain