Gene : Pp3c1_38250 P. patens v3.3
Defline:  (1 of 2) PF07082 - Protein of unknown function (DUF1350) (DUF1350) Genomic Order:  1835
Name:  ? Pp3c1_38250 Secondary Identifier:  ? PAC:32968976
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_38250 0.5kb upstream 0.5kb upstream 4580 true Chr01: 26498095-26502674 Physcomitrium patens
Pp3c1_38250 0.5kb upstream 0.5kb upstream 500 false Chr01: 26502175-26502674 Physcomitrium patens
Pp3c1_38250 0.5kb downstream 0.5kb downstream 4580 true Chr01: 26497595-26502174 Physcomitrium patens
Pp3c1_38250 0.5kb downstream 0.5kb downstream 500 false Chr01: 26497595-26498094 Physcomitrium patens
Pp3c1_38250 1.0kb upstream 1.0kb upstream 5080 true Chr01: 26498095-26503174 Physcomitrium patens
Pp3c1_38250 1.0kb upstream 1.0kb upstream 1000 false Chr01: 26502175-26503174 Physcomitrium patens
Pp3c1_38250 1.0kb downstream 1.0kb downstream 5080 true Chr01: 26497095-26502174 Physcomitrium patens
Pp3c1_38250 1.0kb downstream 1.0kb downstream 1000 false Chr01: 26497095-26498094 Physcomitrium patens
Pp3c1_38250 2.0kb upstream 2.0kb upstream 6080 true Chr01: 26498095-26504174 Physcomitrium patens
Pp3c1_38250 2.0kb upstream 2.0kb upstream 2000 false Chr01: 26502175-26504174 Physcomitrium patens
Pp3c1_38250 2.0kb downstream 2.0kb downstream 6080 true Chr01: 26496095-26502174 Physcomitrium patens
Pp3c1_38250 2.0kb downstream 2.0kb downstream 2000 false Chr01: 26496095-26498094 Physcomitrium patens
Pp3c1_38250 5.0kb upstream 5.0kb upstream 9080 true Chr01: 26498095-26507174 Physcomitrium patens
Pp3c1_38250 5.0kb upstream 5.0kb upstream 5000 false Chr01: 26502175-26507174 Physcomitrium patens
Pp3c1_38250 5.0kb downstream 5.0kb downstream 9080 true Chr01: 26493095-26502174 Physcomitrium patens
Pp3c1_38250 5.0kb downstream 5.0kb downstream 5000 false Chr01: 26493095-26498094 Physcomitrium patens
Pp3c1_38250 10.0kb upstream 10.0kb upstream 14080 true Chr01: 26498095-26512174 Physcomitrium patens
Pp3c1_38250 10.0kb upstream 10.0kb upstream 10000 false Chr01: 26502175-26512174 Physcomitrium patens
Pp3c1_38250 10.0kb downstream 10.0kb downstream 14080 true Chr01: 26488095-26502174 Physcomitrium patens
Pp3c1_38250 10.0kb downstream 10.0kb downstream 10000 false Chr01: 26488095-26498094 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344572 5274 Embryophyte View MSA
123427638 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.764        
cufflinks 26.491     High High
cufflinks 16.232        
cufflinks 0.856       Low
cufflinks 5.475        
cufflinks 19.332        
cufflinks 2.58       Low
cufflinks 12.949        
cufflinks 0.923       Low
cufflinks 20.553     High  
cufflinks 16.334        
cufflinks 3.85       Low
cufflinks 3.256       Low
cufflinks 9.944        
cufflinks 13.823        
cufflinks 14.865        
cufflinks 8.311        
cufflinks 12.697        
cufflinks 9.194        
cufflinks 11.547        
cufflinks 9.733        
cufflinks 13.234        
cufflinks 10.506        
cufflinks 17.777        
cufflinks 14.125        
cufflinks 16.733        
cufflinks 4.641        
cufflinks 10.726        
cufflinks 11.092        
cufflinks 11.954        

0 Strain