Gene : Pp3c1_42450 P. patens v3.3
Defline:  (1 of 22) PTHR22763 - RING ZINC FINGER PROTEIN Genomic Order:  2022
Name:  ? Pp3c1_42450 Secondary Identifier:  ? PAC:32968653
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-7511 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_42450 0.5kb upstream 0.5kb upstream 3490 true Chr01: 29742752-29746241 Physcomitrium patens
Pp3c1_42450 0.5kb upstream 0.5kb upstream 500 false Chr01: 29745742-29746241 Physcomitrium patens
Pp3c1_42450 0.5kb downstream 0.5kb downstream 3490 true Chr01: 29742252-29745741 Physcomitrium patens
Pp3c1_42450 0.5kb downstream 0.5kb downstream 500 false Chr01: 29742252-29742751 Physcomitrium patens
Pp3c1_42450 1.0kb upstream 1.0kb upstream 3990 true Chr01: 29742752-29746741 Physcomitrium patens
Pp3c1_42450 1.0kb upstream 1.0kb upstream 1000 false Chr01: 29745742-29746741 Physcomitrium patens
Pp3c1_42450 1.0kb downstream 1.0kb downstream 3990 true Chr01: 29741752-29745741 Physcomitrium patens
Pp3c1_42450 1.0kb downstream 1.0kb downstream 1000 false Chr01: 29741752-29742751 Physcomitrium patens
Pp3c1_42450 2.0kb upstream 2.0kb upstream 4990 true Chr01: 29742752-29747741 Physcomitrium patens
Pp3c1_42450 2.0kb upstream 2.0kb upstream 2000 false Chr01: 29745742-29747741 Physcomitrium patens
Pp3c1_42450 2.0kb downstream 2.0kb downstream 4990 true Chr01: 29740752-29745741 Physcomitrium patens
Pp3c1_42450 2.0kb downstream 2.0kb downstream 2000 false Chr01: 29740752-29742751 Physcomitrium patens
Pp3c1_42450 5.0kb upstream 5.0kb upstream 7990 true Chr01: 29742752-29750741 Physcomitrium patens
Pp3c1_42450 5.0kb upstream 5.0kb upstream 5000 false Chr01: 29745742-29750741 Physcomitrium patens
Pp3c1_42450 5.0kb downstream 5.0kb downstream 7990 true Chr01: 29737752-29745741 Physcomitrium patens
Pp3c1_42450 5.0kb downstream 5.0kb downstream 5000 false Chr01: 29737752-29742751 Physcomitrium patens
Pp3c1_42450 10.0kb upstream 10.0kb upstream 12990 true Chr01: 29742752-29755741 Physcomitrium patens
Pp3c1_42450 10.0kb upstream 10.0kb upstream 10000 false Chr01: 29745742-29755741 Physcomitrium patens
Pp3c1_42450 10.0kb downstream 10.0kb downstream 12990 true Chr01: 29732752-29745741 Physcomitrium patens
Pp3c1_42450 10.0kb downstream 10.0kb downstream 10000 false Chr01: 29732752-29742751 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429130 5275 Viridiplantae View MSA
121350344 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.611        
cufflinks 59.861     High High
cufflinks 20.569        
cufflinks 25.55     High  
cufflinks 25.149     High  
cufflinks 21.012        
cufflinks 21.054     High  
cufflinks 38.109     High  
cufflinks 21.819        
cufflinks 22.473     High  
cufflinks 35.237     High  
cufflinks 15.088        
cufflinks 13.896        
cufflinks 14.935        
cufflinks 12.697       Low
cufflinks 38.313     High  
cufflinks 36.22     High  
cufflinks 190.307     High High
cufflinks 20.199        
cufflinks 21.334        
cufflinks 8.741       Low
cufflinks 22.621     High  
cufflinks 27.353     High  
cufflinks 20.573        
cufflinks 14.968        
cufflinks 12.812        
cufflinks 35.086     High  
cufflinks 22.298     High  
cufflinks 19.41        
cufflinks 10.686       Low

0 Strain