Gene : Pp3c1_4750 P. patens v3.3
Defline:  (1 of 1) 4.2.1.129 - Squalene--hopanol cyclase / Squalene--hopene cyclase Genomic Order:  214
Name:  ? Pp3c1_4750 Secondary Identifier:  ? PAC:32967296
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-6098 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_4750 0.5kb upstream 0.5kb upstream 3511 true Chr01: 3490534-3494044 Physcomitrium patens
Pp3c1_4750 0.5kb upstream 0.5kb upstream 500 false Chr01: 3490534-3491033 Physcomitrium patens
Pp3c1_4750 0.5kb downstream 0.5kb downstream 3511 true Chr01: 3491034-3494544 Physcomitrium patens
Pp3c1_4750 0.5kb downstream 0.5kb downstream 500 false Chr01: 3494045-3494544 Physcomitrium patens
Pp3c1_4750 1.0kb upstream 1.0kb upstream 4011 true Chr01: 3490034-3494044 Physcomitrium patens
Pp3c1_4750 1.0kb upstream 1.0kb upstream 1000 false Chr01: 3490034-3491033 Physcomitrium patens
Pp3c1_4750 1.0kb downstream 1.0kb downstream 4011 true Chr01: 3491034-3495044 Physcomitrium patens
Pp3c1_4750 1.0kb downstream 1.0kb downstream 1000 false Chr01: 3494045-3495044 Physcomitrium patens
Pp3c1_4750 2.0kb upstream 2.0kb upstream 5011 true Chr01: 3489034-3494044 Physcomitrium patens
Pp3c1_4750 2.0kb upstream 2.0kb upstream 2000 false Chr01: 3489034-3491033 Physcomitrium patens
Pp3c1_4750 2.0kb downstream 2.0kb downstream 5011 true Chr01: 3491034-3496044 Physcomitrium patens
Pp3c1_4750 2.0kb downstream 2.0kb downstream 2000 false Chr01: 3494045-3496044 Physcomitrium patens
Pp3c1_4750 5.0kb upstream 5.0kb upstream 8011 true Chr01: 3486034-3494044 Physcomitrium patens
Pp3c1_4750 5.0kb upstream 5.0kb upstream 5000 false Chr01: 3486034-3491033 Physcomitrium patens
Pp3c1_4750 5.0kb downstream 5.0kb downstream 8011 true Chr01: 3491034-3499044 Physcomitrium patens
Pp3c1_4750 5.0kb downstream 5.0kb downstream 5000 false Chr01: 3494045-3499044 Physcomitrium patens
Pp3c1_4750 10.0kb upstream 10.0kb upstream 13011 true Chr01: 3481034-3494044 Physcomitrium patens
Pp3c1_4750 10.0kb upstream 10.0kb upstream 10000 false Chr01: 3481034-3491033 Physcomitrium patens
Pp3c1_4750 10.0kb downstream 10.0kb downstream 13011 true Chr01: 3491034-3504044 Physcomitrium patens
Pp3c1_4750 10.0kb downstream 10.0kb downstream 10000 false Chr01: 3494045-3504044 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121362995 5274 Embryophyte View MSA
123393189 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.865        
cufflinks 0.572        
cufflinks 1.553        
cufflinks 4.985       High
cufflinks 0.078       Low
cufflinks 0.951        
cufflinks 6.313       High
cufflinks 0.698        
cufflinks 0.16        
cufflinks 9.927       High
cufflinks 0.067     Low Low
cufflinks 0.342        
cufflinks 1.106        
cufflinks 3.034        
cufflinks 1.486        
cufflinks 4.267        
cufflinks 8.332       High
cufflinks 2.78        
cufflinks 2.747        
cufflinks 5.238       High
cufflinks 0.177        
cufflinks 1.049        
cufflinks 0.026     Low Low
cufflinks 0.027     Low Low
cufflinks 0.109        
cufflinks 3.904        
cufflinks 3.26        
cufflinks 0.048     Low Low
cufflinks 0.084       Low
cufflinks 0.073     Low Low

0 Strain