Gene : Pp3c1_620 P. patens v3.3
Defline:  (1 of 1) PTHR22770 - UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED Genomic Order:  39
Name:  ? Pp3c1_620 Secondary Identifier:  ? PAC:32968345
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-7511 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_620 0.5kb upstream 0.5kb upstream 5792 true Chr01: 380056-385847 Physcomitrium patens
Pp3c1_620 0.5kb upstream 0.5kb upstream 500 false Chr01: 385348-385847 Physcomitrium patens
Pp3c1_620 0.5kb downstream 0.5kb downstream 5792 true Chr01: 379556-385347 Physcomitrium patens
Pp3c1_620 0.5kb downstream 0.5kb downstream 500 false Chr01: 379556-380055 Physcomitrium patens
Pp3c1_620 1.0kb upstream 1.0kb upstream 6292 true Chr01: 380056-386347 Physcomitrium patens
Pp3c1_620 1.0kb upstream 1.0kb upstream 1000 false Chr01: 385348-386347 Physcomitrium patens
Pp3c1_620 1.0kb downstream 1.0kb downstream 6292 true Chr01: 379056-385347 Physcomitrium patens
Pp3c1_620 1.0kb downstream 1.0kb downstream 1000 false Chr01: 379056-380055 Physcomitrium patens
Pp3c1_620 2.0kb upstream 2.0kb upstream 7292 true Chr01: 380056-387347 Physcomitrium patens
Pp3c1_620 2.0kb upstream 2.0kb upstream 2000 false Chr01: 385348-387347 Physcomitrium patens
Pp3c1_620 2.0kb downstream 2.0kb downstream 7292 true Chr01: 378056-385347 Physcomitrium patens
Pp3c1_620 2.0kb downstream 2.0kb downstream 2000 false Chr01: 378056-380055 Physcomitrium patens
Pp3c1_620 5.0kb upstream 5.0kb upstream 10292 true Chr01: 380056-390347 Physcomitrium patens
Pp3c1_620 5.0kb upstream 5.0kb upstream 5000 false Chr01: 385348-390347 Physcomitrium patens
Pp3c1_620 5.0kb downstream 5.0kb downstream 10292 true Chr01: 375056-385347 Physcomitrium patens
Pp3c1_620 5.0kb downstream 5.0kb downstream 5000 false Chr01: 375056-380055 Physcomitrium patens
Pp3c1_620 10.0kb upstream 10.0kb upstream 15292 true Chr01: 380056-395347 Physcomitrium patens
Pp3c1_620 10.0kb upstream 10.0kb upstream 10000 false Chr01: 385348-395347 Physcomitrium patens
Pp3c1_620 10.0kb downstream 10.0kb downstream 15292 true Chr01: 370056-385347 Physcomitrium patens
Pp3c1_620 10.0kb downstream 10.0kb downstream 10000 false Chr01: 370056-380055 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343393 5274 Embryophyte View MSA
123379643 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.355        
cufflinks 16.888        
cufflinks 18.779        
cufflinks 19.147        
cufflinks 7.776        
cufflinks 14.99        
cufflinks 5.342       Low
cufflinks 16.25        
cufflinks 14.814        
cufflinks 5.644       Low
cufflinks 7.93        
cufflinks 28.619     High High
cufflinks 17.671        
cufflinks 12.882        
cufflinks 11.487        
cufflinks 14.051        
cufflinks 5.76       Low
cufflinks 6.371       Low
cufflinks 12.897        
cufflinks 7.183        
cufflinks 87.982     High High
cufflinks 10.179        
cufflinks 5.061       Low
cufflinks 17.778        
cufflinks 12.25        
cufflinks 7.862        
cufflinks 9.771        
cufflinks 7.894        
cufflinks 19.91        
cufflinks 7.941        

0 Strain