Gene : Pp3c1_41490 P. patens v3.3
Defline:  (1 of 1) PTHR10429 - DNA-3-METHYLADENINE GLYCOSYLASE Genomic Order:  1984
Name:  ? Pp3c1_41490 Secondary Identifier:  ? PAC:32971055
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_41490 0.5kb upstream 0.5kb upstream 3947 true Chr01: 28987490-28991436 Physcomitrium patens
Pp3c1_41490 0.5kb upstream 0.5kb upstream 500 false Chr01: 28990937-28991436 Physcomitrium patens
Pp3c1_41490 0.5kb downstream 0.5kb downstream 3947 true Chr01: 28986990-28990936 Physcomitrium patens
Pp3c1_41490 0.5kb downstream 0.5kb downstream 500 false Chr01: 28986990-28987489 Physcomitrium patens
Pp3c1_41490 1.0kb upstream 1.0kb upstream 4447 true Chr01: 28987490-28991936 Physcomitrium patens
Pp3c1_41490 1.0kb upstream 1.0kb upstream 1000 false Chr01: 28990937-28991936 Physcomitrium patens
Pp3c1_41490 1.0kb downstream 1.0kb downstream 4447 true Chr01: 28986490-28990936 Physcomitrium patens
Pp3c1_41490 1.0kb downstream 1.0kb downstream 1000 false Chr01: 28986490-28987489 Physcomitrium patens
Pp3c1_41490 2.0kb upstream 2.0kb upstream 5447 true Chr01: 28987490-28992936 Physcomitrium patens
Pp3c1_41490 2.0kb upstream 2.0kb upstream 2000 false Chr01: 28990937-28992936 Physcomitrium patens
Pp3c1_41490 2.0kb downstream 2.0kb downstream 5447 true Chr01: 28985490-28990936 Physcomitrium patens
Pp3c1_41490 2.0kb downstream 2.0kb downstream 2000 false Chr01: 28985490-28987489 Physcomitrium patens
Pp3c1_41490 5.0kb upstream 5.0kb upstream 8447 true Chr01: 28987490-28995936 Physcomitrium patens
Pp3c1_41490 5.0kb upstream 5.0kb upstream 5000 false Chr01: 28990937-28995936 Physcomitrium patens
Pp3c1_41490 5.0kb downstream 5.0kb downstream 8447 true Chr01: 28982490-28990936 Physcomitrium patens
Pp3c1_41490 5.0kb downstream 5.0kb downstream 5000 false Chr01: 28982490-28987489 Physcomitrium patens
Pp3c1_41490 10.0kb upstream 10.0kb upstream 13447 true Chr01: 28987490-29000936 Physcomitrium patens
Pp3c1_41490 10.0kb upstream 10.0kb upstream 10000 false Chr01: 28990937-29000936 Physcomitrium patens
Pp3c1_41490 10.0kb downstream 10.0kb downstream 13447 true Chr01: 28977490-28990936 Physcomitrium patens
Pp3c1_41490 10.0kb downstream 10.0kb downstream 10000 false Chr01: 28977490-28987489 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344812 5274 Embryophyte View MSA
123380104 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.016       High
cufflinks 0.684       Low
cufflinks 2.456        
cufflinks 3.028        
cufflinks 2.241        
cufflinks 2.531        
cufflinks 5.38       High
cufflinks 0.327       Low
cufflinks 1.492        
cufflinks 3.357        
cufflinks 1.186        
cufflinks 1.758        
cufflinks 0.354       Low
cufflinks 0.87       Low
cufflinks 1.593        
cufflinks 3.496       High
cufflinks 1.915        
cufflinks 1.403        
cufflinks 2.651        
cufflinks 2.278        
cufflinks 2.637        
cufflinks 1.828        
cufflinks 2.134        
cufflinks 3.791       High
cufflinks 1.956        
cufflinks 1.553        
cufflinks 2.25        
cufflinks 2.618        
cufflinks 1.504        
cufflinks 1.391        

0 Strain