Gene : Pp3c1_9330 P. patens v3.3
Defline:  (1 of 4) PTHR30508:SF1 - UPF0051 PROTEIN ABCI8, CHLOROPLASTIC-RELATED Genomic Order:  453
Name:  ? Pp3c1_9330 Secondary Identifier:  ? PAC:32970911
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_9330 0.5kb upstream 0.5kb upstream 4083 true Chr01: 6792617-6796699 Physcomitrium patens
Pp3c1_9330 0.5kb upstream 0.5kb upstream 500 false Chr01: 6796200-6796699 Physcomitrium patens
Pp3c1_9330 0.5kb downstream 0.5kb downstream 4083 true Chr01: 6792117-6796199 Physcomitrium patens
Pp3c1_9330 0.5kb downstream 0.5kb downstream 500 false Chr01: 6792117-6792616 Physcomitrium patens
Pp3c1_9330 1.0kb upstream 1.0kb upstream 4583 true Chr01: 6792617-6797199 Physcomitrium patens
Pp3c1_9330 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6796200-6797199 Physcomitrium patens
Pp3c1_9330 1.0kb downstream 1.0kb downstream 4583 true Chr01: 6791617-6796199 Physcomitrium patens
Pp3c1_9330 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6791617-6792616 Physcomitrium patens
Pp3c1_9330 2.0kb upstream 2.0kb upstream 5583 true Chr01: 6792617-6798199 Physcomitrium patens
Pp3c1_9330 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6796200-6798199 Physcomitrium patens
Pp3c1_9330 2.0kb downstream 2.0kb downstream 5583 true Chr01: 6790617-6796199 Physcomitrium patens
Pp3c1_9330 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6790617-6792616 Physcomitrium patens
Pp3c1_9330 5.0kb upstream 5.0kb upstream 8583 true Chr01: 6792617-6801199 Physcomitrium patens
Pp3c1_9330 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6796200-6801199 Physcomitrium patens
Pp3c1_9330 5.0kb downstream 5.0kb downstream 8583 true Chr01: 6787617-6796199 Physcomitrium patens
Pp3c1_9330 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6787617-6792616 Physcomitrium patens
Pp3c1_9330 10.0kb upstream 10.0kb upstream 13583 true Chr01: 6792617-6806199 Physcomitrium patens
Pp3c1_9330 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6796200-6806199 Physcomitrium patens
Pp3c1_9330 10.0kb downstream 10.0kb downstream 13583 true Chr01: 6782617-6796199 Physcomitrium patens
Pp3c1_9330 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6782617-6792616 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345946 5274 Embryophyte View MSA
123424242 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.801        
cufflinks 14.866        
cufflinks 29.068     High High
cufflinks 8.578       Low
cufflinks 11.556        
cufflinks 18.403        
cufflinks 7.989       Low
cufflinks 6.689       Low
cufflinks 34.564     High High
cufflinks 15.699        
cufflinks 25.616     High  
cufflinks 6.077       Low
cufflinks 12.523        
cufflinks 18.578        
cufflinks 11.629        
cufflinks 14.886        
cufflinks 20.907     High  
cufflinks 24.065     High  
cufflinks 21.614     High  
cufflinks 35.019     High High
cufflinks 17.724        
cufflinks 19.586        
cufflinks 9.37       Low
cufflinks 18.46     High  
cufflinks 18.948        
cufflinks 11.133        
cufflinks 20.428     High  
cufflinks 32.264     High High
cufflinks 40.263     High High
cufflinks 31.365     High High

0 Strain