Gene : Pp3c1_7890 P. patens v3.3
Defline:  (1 of 1) PTHR11777:SF7 - THREONYL AND ALANYL TRNA SYNTHETASE SECOND ADDITIONAL DOMAIN-CONTAINING PROTEIN Genomic Order:  373
Name:  ? Pp3c1_7890 Secondary Identifier:  ? PAC:32966969
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_7890 0.5kb upstream 0.5kb upstream 3603 true Chr01: 5798403-5802005 Physcomitrium patens
Pp3c1_7890 0.5kb upstream 0.5kb upstream 500 false Chr01: 5801506-5802005 Physcomitrium patens
Pp3c1_7890 0.5kb downstream 0.5kb downstream 3603 true Chr01: 5797903-5801505 Physcomitrium patens
Pp3c1_7890 0.5kb downstream 0.5kb downstream 500 false Chr01: 5797903-5798402 Physcomitrium patens
Pp3c1_7890 1.0kb upstream 1.0kb upstream 4103 true Chr01: 5798403-5802505 Physcomitrium patens
Pp3c1_7890 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5801506-5802505 Physcomitrium patens
Pp3c1_7890 1.0kb downstream 1.0kb downstream 4103 true Chr01: 5797403-5801505 Physcomitrium patens
Pp3c1_7890 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5797403-5798402 Physcomitrium patens
Pp3c1_7890 2.0kb upstream 2.0kb upstream 5103 true Chr01: 5798403-5803505 Physcomitrium patens
Pp3c1_7890 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5801506-5803505 Physcomitrium patens
Pp3c1_7890 2.0kb downstream 2.0kb downstream 5103 true Chr01: 5796403-5801505 Physcomitrium patens
Pp3c1_7890 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5796403-5798402 Physcomitrium patens
Pp3c1_7890 5.0kb upstream 5.0kb upstream 8103 true Chr01: 5798403-5806505 Physcomitrium patens
Pp3c1_7890 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5801506-5806505 Physcomitrium patens
Pp3c1_7890 5.0kb downstream 5.0kb downstream 8103 true Chr01: 5793403-5801505 Physcomitrium patens
Pp3c1_7890 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5793403-5798402 Physcomitrium patens
Pp3c1_7890 10.0kb upstream 10.0kb upstream 13103 true Chr01: 5798403-5811505 Physcomitrium patens
Pp3c1_7890 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5801506-5811505 Physcomitrium patens
Pp3c1_7890 10.0kb downstream 10.0kb downstream 13103 true Chr01: 5788403-5801505 Physcomitrium patens
Pp3c1_7890 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5788403-5798402 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.023     Low Low
cufflinks 0.072        
cufflinks 0.137        
cufflinks 0.028     Low Low
cufflinks 0.478        
cufflinks 0.115        
cufflinks 0.397        
cufflinks 0.727       High
cufflinks 0.409        
cufflinks 0.062     Low  
cufflinks 0.12        
cufflinks 0.158        
cufflinks 0.339        
cufflinks 0.025     Low Low
cufflinks 0.085        
cufflinks 0.631       High
cufflinks 0.175        
cufflinks 0.029     Low Low
cufflinks 0.108        
cufflinks 0.105        
cufflinks 0.849       High
cufflinks 0.034     Low Low
cufflinks 0.808       High
cufflinks 0.248        
cufflinks 0.13        
cufflinks 0.577       High
cufflinks 0.11        
cufflinks 0.065     Low  
cufflinks 0.07     Low  
cufflinks 2.212       High

0 Strain