Gene : Pp3c1_7720 P. patens v3.3
Genomic Order:  363 Name:  ? Pp3c1_7720
Secondary Identifier:  ? PAC:32967274
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_7720 0.5kb upstream 0.5kb upstream 3938 true Chr01: 5695355-5699292 Physcomitrium patens
Pp3c1_7720 0.5kb upstream 0.5kb upstream 500 false Chr01: 5695355-5695854 Physcomitrium patens
Pp3c1_7720 0.5kb downstream 0.5kb downstream 3938 true Chr01: 5695855-5699792 Physcomitrium patens
Pp3c1_7720 0.5kb downstream 0.5kb downstream 500 false Chr01: 5699293-5699792 Physcomitrium patens
Pp3c1_7720 1.0kb upstream 1.0kb upstream 4438 true Chr01: 5694855-5699292 Physcomitrium patens
Pp3c1_7720 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5694855-5695854 Physcomitrium patens
Pp3c1_7720 1.0kb downstream 1.0kb downstream 4438 true Chr01: 5695855-5700292 Physcomitrium patens
Pp3c1_7720 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5699293-5700292 Physcomitrium patens
Pp3c1_7720 2.0kb upstream 2.0kb upstream 5438 true Chr01: 5693855-5699292 Physcomitrium patens
Pp3c1_7720 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5693855-5695854 Physcomitrium patens
Pp3c1_7720 2.0kb downstream 2.0kb downstream 5438 true Chr01: 5695855-5701292 Physcomitrium patens
Pp3c1_7720 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5699293-5701292 Physcomitrium patens
Pp3c1_7720 5.0kb upstream 5.0kb upstream 8438 true Chr01: 5690855-5699292 Physcomitrium patens
Pp3c1_7720 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5690855-5695854 Physcomitrium patens
Pp3c1_7720 5.0kb downstream 5.0kb downstream 8438 true Chr01: 5695855-5704292 Physcomitrium patens
Pp3c1_7720 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5699293-5704292 Physcomitrium patens
Pp3c1_7720 10.0kb upstream 10.0kb upstream 13438 true Chr01: 5685855-5699292 Physcomitrium patens
Pp3c1_7720 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5685855-5695854 Physcomitrium patens
Pp3c1_7720 10.0kb downstream 10.0kb downstream 13438 true Chr01: 5695855-5709292 Physcomitrium patens
Pp3c1_7720 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5699293-5709292 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343501 5274 Embryophyte View MSA
123427288 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.571        
cufflinks 2.557        
cufflinks 1.929        
cufflinks 2.873        
cufflinks 3.346        
cufflinks 3.338        
cufflinks 2.298        
cufflinks 2.079        
cufflinks 3.12        
cufflinks 1.865        
cufflinks 2.818        
cufflinks 6.085       High
cufflinks 3.272        
cufflinks 2.542        
cufflinks 3.978        
cufflinks 1.641       Low
cufflinks 3.337        
cufflinks 3.392        
cufflinks 3.368        
cufflinks 1.78        
cufflinks 0.809       Low
cufflinks 3.335        
cufflinks 2.819        
cufflinks 3.5        
cufflinks 2.941        
cufflinks 0.841       Low
cufflinks 2.884        
cufflinks 2.487        
cufflinks 5.598       High
cufflinks 3.373        

0 Strain