Gene : Pp3c1_8830 P. patens v3.3
Genomic Order:  429 Name:  ? Pp3c1_8830
Secondary Identifier:  ? PAC:32967490
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_8830 0.5kb upstream 0.5kb upstream 3240 true Chr01: 6403608-6406847 Physcomitrium patens
Pp3c1_8830 0.5kb upstream 0.5kb upstream 500 false Chr01: 6406348-6406847 Physcomitrium patens
Pp3c1_8830 0.5kb downstream 0.5kb downstream 3240 true Chr01: 6403108-6406347 Physcomitrium patens
Pp3c1_8830 0.5kb downstream 0.5kb downstream 500 false Chr01: 6403108-6403607 Physcomitrium patens
Pp3c1_8830 1.0kb upstream 1.0kb upstream 3740 true Chr01: 6403608-6407347 Physcomitrium patens
Pp3c1_8830 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6406348-6407347 Physcomitrium patens
Pp3c1_8830 1.0kb downstream 1.0kb downstream 3740 true Chr01: 6402608-6406347 Physcomitrium patens
Pp3c1_8830 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6402608-6403607 Physcomitrium patens
Pp3c1_8830 2.0kb upstream 2.0kb upstream 4740 true Chr01: 6403608-6408347 Physcomitrium patens
Pp3c1_8830 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6406348-6408347 Physcomitrium patens
Pp3c1_8830 2.0kb downstream 2.0kb downstream 4740 true Chr01: 6401608-6406347 Physcomitrium patens
Pp3c1_8830 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6401608-6403607 Physcomitrium patens
Pp3c1_8830 5.0kb upstream 5.0kb upstream 7740 true Chr01: 6403608-6411347 Physcomitrium patens
Pp3c1_8830 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6406348-6411347 Physcomitrium patens
Pp3c1_8830 5.0kb downstream 5.0kb downstream 7740 true Chr01: 6398608-6406347 Physcomitrium patens
Pp3c1_8830 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6398608-6403607 Physcomitrium patens
Pp3c1_8830 10.0kb upstream 10.0kb upstream 12740 true Chr01: 6403608-6416347 Physcomitrium patens
Pp3c1_8830 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6406348-6416347 Physcomitrium patens
Pp3c1_8830 10.0kb downstream 10.0kb downstream 12740 true Chr01: 6393608-6406347 Physcomitrium patens
Pp3c1_8830 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6393608-6403607 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121333800 5274 Embryophyte Singleton cluster - no MSA
123427797 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.573        
cufflinks 0.792        
cufflinks 0.168       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.652        
cufflinks 0.19       Low
cufflinks 1.601        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.186       High
cufflinks 1.299        
cufflinks 0.421        
cufflinks 0.2       Low
cufflinks 0.31        
cufflinks 0.724        
cufflinks 0.089       Low
cufflinks 0.482        
cufflinks 0.733        
cufflinks 1.586        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.694        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.097        
cufflinks 1.43        
cufflinks 0.386        
cufflinks 1.297        
cufflinks 3.937       High
cufflinks 1.045        
cufflinks 0.233       Low
cufflinks 0.919        
cufflinks 0.142       Low

0 Strain