Gene : Pp3c2_16790 P. patens v3.3
Defline:  (1 of 1) PTHR21532 - PHOSPHODIESTERASE HL Genomic Order:  850
Name:  ? Pp3c2_16790 Secondary Identifier:  ? PAC:32936606
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c2_16790 0.5kb upstream 0.5kb upstream 4064 true Chr02: 11249913-11253976 Physcomitrium patens
Pp3c2_16790 0.5kb upstream 0.5kb upstream 500 false Chr02: 11249913-11250412 Physcomitrium patens
Pp3c2_16790 0.5kb downstream 0.5kb downstream 4064 true Chr02: 11250413-11254476 Physcomitrium patens
Pp3c2_16790 0.5kb downstream 0.5kb downstream 500 false Chr02: 11253977-11254476 Physcomitrium patens
Pp3c2_16790 1.0kb upstream 1.0kb upstream 4564 true Chr02: 11249413-11253976 Physcomitrium patens
Pp3c2_16790 1.0kb upstream 1.0kb upstream 1000 false Chr02: 11249413-11250412 Physcomitrium patens
Pp3c2_16790 1.0kb downstream 1.0kb downstream 4564 true Chr02: 11250413-11254976 Physcomitrium patens
Pp3c2_16790 1.0kb downstream 1.0kb downstream 1000 false Chr02: 11253977-11254976 Physcomitrium patens
Pp3c2_16790 2.0kb upstream 2.0kb upstream 5564 true Chr02: 11248413-11253976 Physcomitrium patens
Pp3c2_16790 2.0kb upstream 2.0kb upstream 2000 false Chr02: 11248413-11250412 Physcomitrium patens
Pp3c2_16790 2.0kb downstream 2.0kb downstream 5564 true Chr02: 11250413-11255976 Physcomitrium patens
Pp3c2_16790 2.0kb downstream 2.0kb downstream 2000 false Chr02: 11253977-11255976 Physcomitrium patens
Pp3c2_16790 5.0kb upstream 5.0kb upstream 8564 true Chr02: 11245413-11253976 Physcomitrium patens
Pp3c2_16790 5.0kb upstream 5.0kb upstream 5000 false Chr02: 11245413-11250412 Physcomitrium patens
Pp3c2_16790 5.0kb downstream 5.0kb downstream 8564 true Chr02: 11250413-11258976 Physcomitrium patens
Pp3c2_16790 5.0kb downstream 5.0kb downstream 5000 false Chr02: 11253977-11258976 Physcomitrium patens
Pp3c2_16790 10.0kb upstream 10.0kb upstream 13564 true Chr02: 11240413-11253976 Physcomitrium patens
Pp3c2_16790 10.0kb upstream 10.0kb upstream 10000 false Chr02: 11240413-11250412 Physcomitrium patens
Pp3c2_16790 10.0kb downstream 10.0kb downstream 13564 true Chr02: 11250413-11263976 Physcomitrium patens
Pp3c2_16790 10.0kb downstream 10.0kb downstream 10000 false Chr02: 11253977-11263976 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121329700 5274 Embryophyte Singleton cluster - no MSA
123366685 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.226        
cufflinks 0.215        
cufflinks 0.129       Low
cufflinks 0.251        
cufflinks 0.264        
cufflinks 0.615       High
cufflinks 0.323        
cufflinks 0.5       High
cufflinks 0.076       Low
cufflinks 0.246        
cufflinks 0.248        
cufflinks 0.26        
cufflinks 0.295        
cufflinks 0.351        
cufflinks 0.458        
cufflinks 0.201        
cufflinks 0.087       Low
cufflinks 0.194        
cufflinks 0.275        
cufflinks 0.36        
cufflinks 0.232        
cufflinks 0.62       High
cufflinks 0.164        
cufflinks 0.494       High
cufflinks 0.164        
cufflinks 0.392        
cufflinks 0.131       Low
cufflinks 0.272        
cufflinks 0.241        
cufflinks 1.496       High

0 Strain