Gene : Pp3c2_23210 P. patens v3.3
Defline:  (1 of 1) PTHR21506 - COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6 Genomic Order:  1160
Name:  ? Pp3c2_23210 Secondary Identifier:  ? PAC:32935640
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c2_23210 0.5kb upstream 0.5kb upstream 4187 true Chr02: 15463656-15467842 Physcomitrium patens
Pp3c2_23210 0.5kb upstream 0.5kb upstream 500 false Chr02: 15467343-15467842 Physcomitrium patens
Pp3c2_23210 0.5kb downstream 0.5kb downstream 4187 true Chr02: 15463156-15467342 Physcomitrium patens
Pp3c2_23210 0.5kb downstream 0.5kb downstream 500 false Chr02: 15463156-15463655 Physcomitrium patens
Pp3c2_23210 1.0kb upstream 1.0kb upstream 4687 true Chr02: 15463656-15468342 Physcomitrium patens
Pp3c2_23210 1.0kb upstream 1.0kb upstream 1000 false Chr02: 15467343-15468342 Physcomitrium patens
Pp3c2_23210 1.0kb downstream 1.0kb downstream 4687 true Chr02: 15462656-15467342 Physcomitrium patens
Pp3c2_23210 1.0kb downstream 1.0kb downstream 1000 false Chr02: 15462656-15463655 Physcomitrium patens
Pp3c2_23210 2.0kb upstream 2.0kb upstream 5687 true Chr02: 15463656-15469342 Physcomitrium patens
Pp3c2_23210 2.0kb upstream 2.0kb upstream 2000 false Chr02: 15467343-15469342 Physcomitrium patens
Pp3c2_23210 2.0kb downstream 2.0kb downstream 5687 true Chr02: 15461656-15467342 Physcomitrium patens
Pp3c2_23210 2.0kb downstream 2.0kb downstream 2000 false Chr02: 15461656-15463655 Physcomitrium patens
Pp3c2_23210 5.0kb upstream 5.0kb upstream 8687 true Chr02: 15463656-15472342 Physcomitrium patens
Pp3c2_23210 5.0kb upstream 5.0kb upstream 5000 false Chr02: 15467343-15472342 Physcomitrium patens
Pp3c2_23210 5.0kb downstream 5.0kb downstream 8687 true Chr02: 15458656-15467342 Physcomitrium patens
Pp3c2_23210 5.0kb downstream 5.0kb downstream 5000 false Chr02: 15458656-15463655 Physcomitrium patens
Pp3c2_23210 10.0kb upstream 10.0kb upstream 13687 true Chr02: 15463656-15477342 Physcomitrium patens
Pp3c2_23210 10.0kb upstream 10.0kb upstream 10000 false Chr02: 15467343-15477342 Physcomitrium patens
Pp3c2_23210 10.0kb downstream 10.0kb downstream 13687 true Chr02: 15453656-15467342 Physcomitrium patens
Pp3c2_23210 10.0kb downstream 10.0kb downstream 10000 false Chr02: 15453656-15463655 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346498 5274 Embryophyte View MSA
123424331 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.859        
cufflinks 3.166       Low
cufflinks 2.517       Low
cufflinks 2.973       Low
cufflinks 4.236        
cufflinks 4.965        
cufflinks 3.582        
cufflinks 4.071        
cufflinks 4.712        
cufflinks 3.782        
cufflinks 4.126        
cufflinks 4.728        
cufflinks 5.621       High
cufflinks 3.781        
cufflinks 5.384       High
cufflinks 5.486       High
cufflinks 5.056        
cufflinks 4.462        
cufflinks 3.262       Low
cufflinks 3.145       Low
cufflinks 3.583        
cufflinks 5.361       High
cufflinks 4.18        
cufflinks 4.13        
cufflinks 3.916        
cufflinks 4.983        
cufflinks 4.544        
cufflinks 2.244       Low
cufflinks 5.335       High
cufflinks 4.606        

0 Strain