Gene : Pp3c2_27740 P. patens v3.3
Defline:  (1 of 6) PTHR23023:SF37 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA2-RELATED Genomic Order:  1352
Name:  ? Pp3c2_27740 Secondary Identifier:  ? PAC:32934340
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWYDQC-4 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c2_27740 0.5kb upstream 0.5kb upstream 3737 true Chr02: 18700274-18704010 Physcomitrium patens
Pp3c2_27740 0.5kb upstream 0.5kb upstream 500 false Chr02: 18703511-18704010 Physcomitrium patens
Pp3c2_27740 0.5kb downstream 0.5kb downstream 3737 true Chr02: 18699774-18703510 Physcomitrium patens
Pp3c2_27740 0.5kb downstream 0.5kb downstream 500 false Chr02: 18699774-18700273 Physcomitrium patens
Pp3c2_27740 1.0kb upstream 1.0kb upstream 4237 true Chr02: 18700274-18704510 Physcomitrium patens
Pp3c2_27740 1.0kb upstream 1.0kb upstream 1000 false Chr02: 18703511-18704510 Physcomitrium patens
Pp3c2_27740 1.0kb downstream 1.0kb downstream 4237 true Chr02: 18699274-18703510 Physcomitrium patens
Pp3c2_27740 1.0kb downstream 1.0kb downstream 1000 false Chr02: 18699274-18700273 Physcomitrium patens
Pp3c2_27740 2.0kb upstream 2.0kb upstream 5237 true Chr02: 18700274-18705510 Physcomitrium patens
Pp3c2_27740 2.0kb upstream 2.0kb upstream 2000 false Chr02: 18703511-18705510 Physcomitrium patens
Pp3c2_27740 2.0kb downstream 2.0kb downstream 5237 true Chr02: 18698274-18703510 Physcomitrium patens
Pp3c2_27740 2.0kb downstream 2.0kb downstream 2000 false Chr02: 18698274-18700273 Physcomitrium patens
Pp3c2_27740 5.0kb upstream 5.0kb upstream 8237 true Chr02: 18700274-18708510 Physcomitrium patens
Pp3c2_27740 5.0kb upstream 5.0kb upstream 5000 false Chr02: 18703511-18708510 Physcomitrium patens
Pp3c2_27740 5.0kb downstream 5.0kb downstream 8237 true Chr02: 18695274-18703510 Physcomitrium patens
Pp3c2_27740 5.0kb downstream 5.0kb downstream 5000 false Chr02: 18695274-18700273 Physcomitrium patens
Pp3c2_27740 10.0kb upstream 10.0kb upstream 13237 true Chr02: 18700274-18713510 Physcomitrium patens
Pp3c2_27740 10.0kb upstream 10.0kb upstream 10000 false Chr02: 18703511-18713510 Physcomitrium patens
Pp3c2_27740 10.0kb downstream 10.0kb downstream 13237 true Chr02: 18690274-18703510 Physcomitrium patens
Pp3c2_27740 10.0kb downstream 10.0kb downstream 10000 false Chr02: 18690274-18700273 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351632 5274 Embryophyte View MSA
123426700 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.032     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.009     Low  
cufflinks 0.021     Low  
cufflinks 0.002     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.127       High
cufflinks 0.024     Low  
cufflinks 0.109       High
cufflinks 0.163       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.004     Low Low

0 Strain