Gene : Pp3c2_32240 P. patens v3.3
Defline:  (1 of 2) KOG4268 - Uncharacterized conserved protein containing PAP2 domain Genomic Order:  1605
Name:  ? Pp3c2_32240 Secondary Identifier:  ? PAC:32933976
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens TRIGLSYN-PWY Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c2_32240 0.5kb upstream 0.5kb upstream 1740 true Chr02: 21302081-21303820 Physcomitrium patens
Pp3c2_32240 0.5kb upstream 0.5kb upstream 500 false Chr02: 21303321-21303820 Physcomitrium patens
Pp3c2_32240 0.5kb downstream 0.5kb downstream 1740 true Chr02: 21301581-21303320 Physcomitrium patens
Pp3c2_32240 0.5kb downstream 0.5kb downstream 500 false Chr02: 21301581-21302080 Physcomitrium patens
Pp3c2_32240 1.0kb upstream 1.0kb upstream 2240 true Chr02: 21302081-21304320 Physcomitrium patens
Pp3c2_32240 1.0kb upstream 1.0kb upstream 1000 false Chr02: 21303321-21304320 Physcomitrium patens
Pp3c2_32240 1.0kb downstream 1.0kb downstream 2240 true Chr02: 21301081-21303320 Physcomitrium patens
Pp3c2_32240 1.0kb downstream 1.0kb downstream 1000 false Chr02: 21301081-21302080 Physcomitrium patens
Pp3c2_32240 2.0kb upstream 2.0kb upstream 3240 true Chr02: 21302081-21305320 Physcomitrium patens
Pp3c2_32240 2.0kb upstream 2.0kb upstream 2000 false Chr02: 21303321-21305320 Physcomitrium patens
Pp3c2_32240 2.0kb downstream 2.0kb downstream 3240 true Chr02: 21300081-21303320 Physcomitrium patens
Pp3c2_32240 2.0kb downstream 2.0kb downstream 2000 false Chr02: 21300081-21302080 Physcomitrium patens
Pp3c2_32240 5.0kb upstream 5.0kb upstream 6240 true Chr02: 21302081-21308320 Physcomitrium patens
Pp3c2_32240 5.0kb upstream 5.0kb upstream 5000 false Chr02: 21303321-21308320 Physcomitrium patens
Pp3c2_32240 5.0kb downstream 5.0kb downstream 6240 true Chr02: 21297081-21303320 Physcomitrium patens
Pp3c2_32240 5.0kb downstream 5.0kb downstream 5000 false Chr02: 21297081-21302080 Physcomitrium patens
Pp3c2_32240 10.0kb upstream 10.0kb upstream 11240 true Chr02: 21302081-21313320 Physcomitrium patens
Pp3c2_32240 10.0kb upstream 10.0kb upstream 10000 false Chr02: 21303321-21313320 Physcomitrium patens
Pp3c2_32240 10.0kb downstream 10.0kb downstream 11240 true Chr02: 21292081-21303320 Physcomitrium patens
Pp3c2_32240 10.0kb downstream 10.0kb downstream 10000 false Chr02: 21292081-21302080 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121349083 5274 Embryophyte View MSA
123381157 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.011     Low  
cufflinks 0.007     Low Low
cufflinks 0.037     Low  
cufflinks 0.022     Low  
cufflinks 0.029     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low Low
cufflinks 0.017     Low  
cufflinks 0.009     Low  
cufflinks 0.016     Low  
cufflinks 0.084       High
cufflinks 0.093     Low High
cufflinks 0.014     Low  
cufflinks 0.009     Low  
cufflinks 0.017     Low  
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.006     Low Low
cufflinks 0.021     Low  
cufflinks 0.028     Low  
cufflinks 0.02     Low  
cufflinks 0.032     Low  
cufflinks 0.042     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.048     Low  
cufflinks 0.024     Low  
cufflinks 0.025     Low  
cufflinks 0.006     Low Low

0 Strain