Gene : Pp3c2_5960 P. patens v3.3
Defline:  (1 of 22) PTHR22763 - RING ZINC FINGER PROTEIN Genomic Order:  327
Name:  ? Pp3c2_5960 Secondary Identifier:  ? PAC:32934735
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-7511 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c2_5960 0.5kb upstream 0.5kb upstream 3360 true Chr02: 3937528-3940887 Physcomitrium patens
Pp3c2_5960 0.5kb upstream 0.5kb upstream 500 false Chr02: 3937528-3938027 Physcomitrium patens
Pp3c2_5960 0.5kb downstream 0.5kb downstream 3360 true Chr02: 3938028-3941387 Physcomitrium patens
Pp3c2_5960 0.5kb downstream 0.5kb downstream 500 false Chr02: 3940888-3941387 Physcomitrium patens
Pp3c2_5960 1.0kb upstream 1.0kb upstream 3860 true Chr02: 3937028-3940887 Physcomitrium patens
Pp3c2_5960 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3937028-3938027 Physcomitrium patens
Pp3c2_5960 1.0kb downstream 1.0kb downstream 3860 true Chr02: 3938028-3941887 Physcomitrium patens
Pp3c2_5960 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3940888-3941887 Physcomitrium patens
Pp3c2_5960 2.0kb upstream 2.0kb upstream 4860 true Chr02: 3936028-3940887 Physcomitrium patens
Pp3c2_5960 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3936028-3938027 Physcomitrium patens
Pp3c2_5960 2.0kb downstream 2.0kb downstream 4860 true Chr02: 3938028-3942887 Physcomitrium patens
Pp3c2_5960 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3940888-3942887 Physcomitrium patens
Pp3c2_5960 5.0kb upstream 5.0kb upstream 7860 true Chr02: 3933028-3940887 Physcomitrium patens
Pp3c2_5960 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3933028-3938027 Physcomitrium patens
Pp3c2_5960 5.0kb downstream 5.0kb downstream 7860 true Chr02: 3938028-3945887 Physcomitrium patens
Pp3c2_5960 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3940888-3945887 Physcomitrium patens
Pp3c2_5960 10.0kb upstream 10.0kb upstream 12860 true Chr02: 3928028-3940887 Physcomitrium patens
Pp3c2_5960 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3928028-3938027 Physcomitrium patens
Pp3c2_5960 10.0kb downstream 10.0kb downstream 12860 true Chr02: 3938028-3950887 Physcomitrium patens
Pp3c2_5960 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3940888-3950887 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429130 5275 Viridiplantae View MSA
121350344 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.075        
cufflinks 0.048     Low  
cufflinks 0.028     Low Low
cufflinks 0.021     Low Low
cufflinks 0.086        
cufflinks 0.076     Low  
cufflinks 0.351       High
cufflinks 0.141        
cufflinks 0.418       High
cufflinks 0.388       High
cufflinks 0.08     Low  
cufflinks 0.092        
cufflinks 0.058     Low  
cufflinks 0.153        
cufflinks 0.066     Low  
cufflinks 0.09     Low  
cufflinks 1.263       High
cufflinks 0.053     Low  
cufflinks 0.033     Low  
cufflinks 0.077     Low  
cufflinks 0.135        
cufflinks 0.034     Low  
cufflinks 0.064     Low  
cufflinks 0.021     Low Low
cufflinks 0.045     Low  
cufflinks 0.011     Low Low
cufflinks 0.072     Low  
cufflinks 0.147        
cufflinks 0.157        
cufflinks 0.135        

0 Strain