Gene : Pp3c2_4040 P. patens v3.3
Defline:  (1 of 2) PTHR12855:SF10 - DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 Genomic Order:  215
Name:  ? Pp3c2_4040 Secondary Identifier:  ? PAC:32933457
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c2_4040 0.5kb upstream 0.5kb upstream 7034 true Chr02: 2544427-2551460 Physcomitrium patens
Pp3c2_4040 0.5kb upstream 0.5kb upstream 500 false Chr02: 2550961-2551460 Physcomitrium patens
Pp3c2_4040 0.5kb downstream 0.5kb downstream 7034 true Chr02: 2543927-2550960 Physcomitrium patens
Pp3c2_4040 0.5kb downstream 0.5kb downstream 500 false Chr02: 2543927-2544426 Physcomitrium patens
Pp3c2_4040 1.0kb upstream 1.0kb upstream 7534 true Chr02: 2544427-2551960 Physcomitrium patens
Pp3c2_4040 1.0kb upstream 1.0kb upstream 1000 false Chr02: 2550961-2551960 Physcomitrium patens
Pp3c2_4040 1.0kb downstream 1.0kb downstream 7534 true Chr02: 2543427-2550960 Physcomitrium patens
Pp3c2_4040 1.0kb downstream 1.0kb downstream 1000 false Chr02: 2543427-2544426 Physcomitrium patens
Pp3c2_4040 2.0kb upstream 2.0kb upstream 8534 true Chr02: 2544427-2552960 Physcomitrium patens
Pp3c2_4040 2.0kb upstream 2.0kb upstream 2000 false Chr02: 2550961-2552960 Physcomitrium patens
Pp3c2_4040 2.0kb downstream 2.0kb downstream 8534 true Chr02: 2542427-2550960 Physcomitrium patens
Pp3c2_4040 2.0kb downstream 2.0kb downstream 2000 false Chr02: 2542427-2544426 Physcomitrium patens
Pp3c2_4040 5.0kb upstream 5.0kb upstream 11534 true Chr02: 2544427-2555960 Physcomitrium patens
Pp3c2_4040 5.0kb upstream 5.0kb upstream 5000 false Chr02: 2550961-2555960 Physcomitrium patens
Pp3c2_4040 5.0kb downstream 5.0kb downstream 11534 true Chr02: 2539427-2550960 Physcomitrium patens
Pp3c2_4040 5.0kb downstream 5.0kb downstream 5000 false Chr02: 2539427-2544426 Physcomitrium patens
Pp3c2_4040 10.0kb upstream 10.0kb upstream 16534 true Chr02: 2544427-2560960 Physcomitrium patens
Pp3c2_4040 10.0kb upstream 10.0kb upstream 10000 false Chr02: 2550961-2560960 Physcomitrium patens
Pp3c2_4040 10.0kb downstream 10.0kb downstream 16534 true Chr02: 2534427-2550960 Physcomitrium patens
Pp3c2_4040 10.0kb downstream 10.0kb downstream 10000 false Chr02: 2534427-2544426 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429045 5275 Viridiplantae View MSA
121347026 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.561        
cufflinks 6.392        
cufflinks 4.832        
cufflinks 5.599        
cufflinks 8.026        
cufflinks 7.744        
cufflinks 12.442       High
cufflinks 8.835        
cufflinks 10.856        
cufflinks 11.131       High
cufflinks 4.45        
cufflinks 11.713       High
cufflinks 5.686        
cufflinks 6.697        
cufflinks 8.026        
cufflinks 6.325        
cufflinks 10.361        
cufflinks 11.938       High
cufflinks 8.838        
cufflinks 1.923       Low
cufflinks 5.896        
cufflinks 7.253        
cufflinks 12.391       High
cufflinks 1.853       Low
cufflinks 5.134        
cufflinks 7.847        
cufflinks 5.317        
cufflinks 8.179        
cufflinks 7.167        
cufflinks 5.19        

0 Strain