Gene : Pp3c2_5380 P. patens v3.3
Defline:  (1 of 1) PTHR24093:SF82 - CATION-TRANSPORTING ATPASE 13A1-RELATED Genomic Order:  295
Name:  ? Pp3c2_5380 Secondary Identifier:  ? PAC:32935664
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c2_5380 0.5kb upstream 0.5kb upstream 9494 true Chr02: 3551050-3560543 Physcomitrium patens
Pp3c2_5380 0.5kb upstream 0.5kb upstream 500 false Chr02: 3551050-3551549 Physcomitrium patens
Pp3c2_5380 0.5kb downstream 0.5kb downstream 9494 true Chr02: 3551550-3561043 Physcomitrium patens
Pp3c2_5380 0.5kb downstream 0.5kb downstream 500 false Chr02: 3560544-3561043 Physcomitrium patens
Pp3c2_5380 1.0kb upstream 1.0kb upstream 9994 true Chr02: 3550550-3560543 Physcomitrium patens
Pp3c2_5380 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3550550-3551549 Physcomitrium patens
Pp3c2_5380 1.0kb downstream 1.0kb downstream 9994 true Chr02: 3551550-3561543 Physcomitrium patens
Pp3c2_5380 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3560544-3561543 Physcomitrium patens
Pp3c2_5380 2.0kb upstream 2.0kb upstream 10994 true Chr02: 3549550-3560543 Physcomitrium patens
Pp3c2_5380 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3549550-3551549 Physcomitrium patens
Pp3c2_5380 2.0kb downstream 2.0kb downstream 10994 true Chr02: 3551550-3562543 Physcomitrium patens
Pp3c2_5380 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3560544-3562543 Physcomitrium patens
Pp3c2_5380 5.0kb upstream 5.0kb upstream 13994 true Chr02: 3546550-3560543 Physcomitrium patens
Pp3c2_5380 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3546550-3551549 Physcomitrium patens
Pp3c2_5380 5.0kb downstream 5.0kb downstream 13994 true Chr02: 3551550-3565543 Physcomitrium patens
Pp3c2_5380 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3560544-3565543 Physcomitrium patens
Pp3c2_5380 10.0kb upstream 10.0kb upstream 18994 true Chr02: 3541550-3560543 Physcomitrium patens
Pp3c2_5380 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3541550-3551549 Physcomitrium patens
Pp3c2_5380 10.0kb downstream 10.0kb downstream 18994 true Chr02: 3551550-3570543 Physcomitrium patens
Pp3c2_5380 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3560544-3570543 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344570 5274 Embryophyte View MSA
123424459 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.912       Low
cufflinks 8.058       Low
cufflinks 9.124        
cufflinks 15.054       High
cufflinks 7.971       Low
cufflinks 13.624     High High
cufflinks 13.09       High
cufflinks 10.716        
cufflinks 11.683        
cufflinks 13.871       High
cufflinks 9.05        
cufflinks 12.884     High  
cufflinks 7.586       Low
cufflinks 11.568        
cufflinks 13.987       High
cufflinks 7.362       Low
cufflinks 11.648        
cufflinks 7.311       Low
cufflinks 8.766        
cufflinks 11.331        
cufflinks 8.154       Low
cufflinks 9.437        
cufflinks 10.67        
cufflinks 13.46       High
cufflinks 10.189        
cufflinks 10.654        
cufflinks 11.104        
cufflinks 9.574        
cufflinks 11.25        
cufflinks 14.972       High

0 Strain