Gene : Pp3c2_890 P. patens v3.3
Defline:  (1 of 28) PTHR10209:SF155 - 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED Genomic Order:  44
Name:  ? Pp3c2_890 Secondary Identifier:  ? PAC:32935268
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-5032 Physcomitrium patens pathologic  
Ppatens PWY-5053 Physcomitrium patens pathologic  
Ppatens PWY-6887 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c2_890 0.5kb upstream 0.5kb upstream 3426 true Chr02: 372648-376073 Physcomitrium patens
Pp3c2_890 0.5kb upstream 0.5kb upstream 500 false Chr02: 375574-376073 Physcomitrium patens
Pp3c2_890 0.5kb downstream 0.5kb downstream 3426 true Chr02: 372148-375573 Physcomitrium patens
Pp3c2_890 0.5kb downstream 0.5kb downstream 500 false Chr02: 372148-372647 Physcomitrium patens
Pp3c2_890 1.0kb upstream 1.0kb upstream 3926 true Chr02: 372648-376573 Physcomitrium patens
Pp3c2_890 1.0kb upstream 1.0kb upstream 1000 false Chr02: 375574-376573 Physcomitrium patens
Pp3c2_890 1.0kb downstream 1.0kb downstream 3926 true Chr02: 371648-375573 Physcomitrium patens
Pp3c2_890 1.0kb downstream 1.0kb downstream 1000 false Chr02: 371648-372647 Physcomitrium patens
Pp3c2_890 2.0kb upstream 2.0kb upstream 4926 true Chr02: 372648-377573 Physcomitrium patens
Pp3c2_890 2.0kb upstream 2.0kb upstream 2000 false Chr02: 375574-377573 Physcomitrium patens
Pp3c2_890 2.0kb downstream 2.0kb downstream 4926 true Chr02: 370648-375573 Physcomitrium patens
Pp3c2_890 2.0kb downstream 2.0kb downstream 2000 false Chr02: 370648-372647 Physcomitrium patens
Pp3c2_890 5.0kb upstream 5.0kb upstream 7926 true Chr02: 372648-380573 Physcomitrium patens
Pp3c2_890 5.0kb upstream 5.0kb upstream 5000 false Chr02: 375574-380573 Physcomitrium patens
Pp3c2_890 5.0kb downstream 5.0kb downstream 7926 true Chr02: 367648-375573 Physcomitrium patens
Pp3c2_890 5.0kb downstream 5.0kb downstream 5000 false Chr02: 367648-372647 Physcomitrium patens
Pp3c2_890 10.0kb upstream 10.0kb upstream 12926 true Chr02: 372648-385573 Physcomitrium patens
Pp3c2_890 10.0kb upstream 10.0kb upstream 10000 false Chr02: 375574-385573 Physcomitrium patens
Pp3c2_890 10.0kb downstream 10.0kb downstream 12926 true Chr02: 362648-375573 Physcomitrium patens
Pp3c2_890 10.0kb downstream 10.0kb downstream 10000 false Chr02: 362648-372647 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121349233 5274 Embryophyte View MSA
123381227 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.009     Low  
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.025     Low  
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.006     Low  
cufflinks 0.309       High
cufflinks 0.018     Low  
cufflinks 0.003     Low  
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.322       High
cufflinks 0.018     Low  
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.001     Low Low
cufflinks 0.002     Low  
cufflinks 0.004     Low  

0 Strain