Gene : Pp3c3_16770 P. patens v3.3
Defline:  (1 of 1) KOG4431 - Uncharacterized protein, induced by hypoxia Genomic Order:  759
Name:  ? Pp3c3_16770 Secondary Identifier:  ? PAC:32943144
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c3_16770 0.5kb upstream 0.5kb upstream 3624 true Chr03: 11803960-11807583 Physcomitrium patens
Pp3c3_16770 0.5kb upstream 0.5kb upstream 500 false Chr03: 11803960-11804459 Physcomitrium patens
Pp3c3_16770 0.5kb downstream 0.5kb downstream 3624 true Chr03: 11804460-11808083 Physcomitrium patens
Pp3c3_16770 0.5kb downstream 0.5kb downstream 500 false Chr03: 11807584-11808083 Physcomitrium patens
Pp3c3_16770 1.0kb upstream 1.0kb upstream 4124 true Chr03: 11803460-11807583 Physcomitrium patens
Pp3c3_16770 1.0kb upstream 1.0kb upstream 1000 false Chr03: 11803460-11804459 Physcomitrium patens
Pp3c3_16770 1.0kb downstream 1.0kb downstream 4124 true Chr03: 11804460-11808583 Physcomitrium patens
Pp3c3_16770 1.0kb downstream 1.0kb downstream 1000 false Chr03: 11807584-11808583 Physcomitrium patens
Pp3c3_16770 2.0kb upstream 2.0kb upstream 5124 true Chr03: 11802460-11807583 Physcomitrium patens
Pp3c3_16770 2.0kb upstream 2.0kb upstream 2000 false Chr03: 11802460-11804459 Physcomitrium patens
Pp3c3_16770 2.0kb downstream 2.0kb downstream 5124 true Chr03: 11804460-11809583 Physcomitrium patens
Pp3c3_16770 2.0kb downstream 2.0kb downstream 2000 false Chr03: 11807584-11809583 Physcomitrium patens
Pp3c3_16770 5.0kb upstream 5.0kb upstream 8124 true Chr03: 11799460-11807583 Physcomitrium patens
Pp3c3_16770 5.0kb upstream 5.0kb upstream 5000 false Chr03: 11799460-11804459 Physcomitrium patens
Pp3c3_16770 5.0kb downstream 5.0kb downstream 8124 true Chr03: 11804460-11812583 Physcomitrium patens
Pp3c3_16770 5.0kb downstream 5.0kb downstream 5000 false Chr03: 11807584-11812583 Physcomitrium patens
Pp3c3_16770 10.0kb upstream 10.0kb upstream 13124 true Chr03: 11794460-11807583 Physcomitrium patens
Pp3c3_16770 10.0kb upstream 10.0kb upstream 10000 false Chr03: 11794460-11804459 Physcomitrium patens
Pp3c3_16770 10.0kb downstream 10.0kb downstream 13124 true Chr03: 11804460-11817583 Physcomitrium patens
Pp3c3_16770 10.0kb downstream 10.0kb downstream 10000 false Chr03: 11807584-11817583 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347874 5274 Embryophyte View MSA
123423754 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.652       Low
cufflinks 2.908        
cufflinks 2.735       Low
cufflinks 5.188        
cufflinks 4.967        
cufflinks 3.123        
cufflinks 3.367        
cufflinks 7.822       High
cufflinks 4.769        
cufflinks 8.03       High
cufflinks 5.133        
cufflinks 3.543        
cufflinks 3.841        
cufflinks 3.419        
cufflinks 2.414       Low
cufflinks 3.323        
cufflinks 4.926        
cufflinks 3.417        
cufflinks 3.448        
cufflinks 3.433        
cufflinks 2.601       Low
cufflinks 3.215        
cufflinks 4.272        
cufflinks 3.304        
cufflinks 6.257       High
cufflinks 4.226        
cufflinks 3.649        
cufflinks 3.543        
cufflinks 3.213        
cufflinks 5.08        

0 Strain