Gene : Pp3c3_21750 P. patens v3.3
Defline:  (1 of 2) PTHR35703:SF2 - HEME OXYGENASE 4, CHLOROPLASTIC Genomic Order:  1007
Name:  ? Pp3c3_21750 Secondary Identifier:  ? PAC:32944524
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-5874 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c3_21750 0.5kb upstream 0.5kb upstream 3153 true Chr03: 14997006-15000158 Physcomitrium patens
Pp3c3_21750 0.5kb upstream 0.5kb upstream 500 false Chr03: 14999659-15000158 Physcomitrium patens
Pp3c3_21750 0.5kb downstream 0.5kb downstream 3153 true Chr03: 14996506-14999658 Physcomitrium patens
Pp3c3_21750 0.5kb downstream 0.5kb downstream 500 false Chr03: 14996506-14997005 Physcomitrium patens
Pp3c3_21750 1.0kb upstream 1.0kb upstream 3653 true Chr03: 14997006-15000658 Physcomitrium patens
Pp3c3_21750 1.0kb upstream 1.0kb upstream 1000 false Chr03: 14999659-15000658 Physcomitrium patens
Pp3c3_21750 1.0kb downstream 1.0kb downstream 3653 true Chr03: 14996006-14999658 Physcomitrium patens
Pp3c3_21750 1.0kb downstream 1.0kb downstream 1000 false Chr03: 14996006-14997005 Physcomitrium patens
Pp3c3_21750 2.0kb upstream 2.0kb upstream 4653 true Chr03: 14997006-15001658 Physcomitrium patens
Pp3c3_21750 2.0kb upstream 2.0kb upstream 2000 false Chr03: 14999659-15001658 Physcomitrium patens
Pp3c3_21750 2.0kb downstream 2.0kb downstream 4653 true Chr03: 14995006-14999658 Physcomitrium patens
Pp3c3_21750 2.0kb downstream 2.0kb downstream 2000 false Chr03: 14995006-14997005 Physcomitrium patens
Pp3c3_21750 5.0kb upstream 5.0kb upstream 7653 true Chr03: 14997006-15004658 Physcomitrium patens
Pp3c3_21750 5.0kb upstream 5.0kb upstream 5000 false Chr03: 14999659-15004658 Physcomitrium patens
Pp3c3_21750 5.0kb downstream 5.0kb downstream 7653 true Chr03: 14992006-14999658 Physcomitrium patens
Pp3c3_21750 5.0kb downstream 5.0kb downstream 5000 false Chr03: 14992006-14997005 Physcomitrium patens
Pp3c3_21750 10.0kb upstream 10.0kb upstream 12653 true Chr03: 14997006-15009658 Physcomitrium patens
Pp3c3_21750 10.0kb upstream 10.0kb upstream 10000 false Chr03: 14999659-15009658 Physcomitrium patens
Pp3c3_21750 10.0kb downstream 10.0kb downstream 12653 true Chr03: 14987006-14999658 Physcomitrium patens
Pp3c3_21750 10.0kb downstream 10.0kb downstream 10000 false Chr03: 14987006-14997005 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347679 5274 Embryophyte View MSA
123424297 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.787        
cufflinks 25.089     High High
cufflinks 5.598        
cufflinks 9.004        
cufflinks 19.858       High
cufflinks 8.467        
cufflinks 15.419       High
cufflinks 7.963        
cufflinks 11.184        
cufflinks 14.209        
cufflinks 1.563       Low
cufflinks 5.234        
cufflinks 3.463       Low
cufflinks 6.298        
cufflinks 7.746        
cufflinks 27.195     High High
cufflinks 9.319        
cufflinks 1.813       Low
cufflinks 4.3        
cufflinks 5.362        
cufflinks 3.904        
cufflinks 15.331       High
cufflinks 10.267        
cufflinks 7.952        
cufflinks 8.279        
cufflinks 10.183        
cufflinks 4.455        
cufflinks 1.709       Low
cufflinks 10.973        
cufflinks 4.023        

0 Strain