Gene : Pp3c3_27900 P. patens v3.3
Defline:  (1 of 34) PF03195 - Protein of unknown function DUF260 (DUF260) Genomic Order:  1309
Name:  ? Pp3c3_27900 Secondary Identifier:  ? PAC:32941964
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c3_27900 0.5kb upstream 0.5kb upstream 4787 true Chr03: 18901583-18906369 Physcomitrium patens
Pp3c3_27900 0.5kb upstream 0.5kb upstream 500 false Chr03: 18901583-18902082 Physcomitrium patens
Pp3c3_27900 0.5kb downstream 0.5kb downstream 4787 true Chr03: 18902083-18906869 Physcomitrium patens
Pp3c3_27900 0.5kb downstream 0.5kb downstream 500 false Chr03: 18906370-18906869 Physcomitrium patens
Pp3c3_27900 1.0kb upstream 1.0kb upstream 5287 true Chr03: 18901083-18906369 Physcomitrium patens
Pp3c3_27900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 18901083-18902082 Physcomitrium patens
Pp3c3_27900 1.0kb downstream 1.0kb downstream 5287 true Chr03: 18902083-18907369 Physcomitrium patens
Pp3c3_27900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 18906370-18907369 Physcomitrium patens
Pp3c3_27900 2.0kb upstream 2.0kb upstream 6287 true Chr03: 18900083-18906369 Physcomitrium patens
Pp3c3_27900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 18900083-18902082 Physcomitrium patens
Pp3c3_27900 2.0kb downstream 2.0kb downstream 6287 true Chr03: 18902083-18908369 Physcomitrium patens
Pp3c3_27900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 18906370-18908369 Physcomitrium patens
Pp3c3_27900 5.0kb upstream 5.0kb upstream 9287 true Chr03: 18897083-18906369 Physcomitrium patens
Pp3c3_27900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 18897083-18902082 Physcomitrium patens
Pp3c3_27900 5.0kb downstream 5.0kb downstream 9287 true Chr03: 18902083-18911369 Physcomitrium patens
Pp3c3_27900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 18906370-18911369 Physcomitrium patens
Pp3c3_27900 10.0kb upstream 10.0kb upstream 14287 true Chr03: 18892083-18906369 Physcomitrium patens
Pp3c3_27900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 18892083-18902082 Physcomitrium patens
Pp3c3_27900 10.0kb downstream 10.0kb downstream 14287 true Chr03: 18902083-18916369 Physcomitrium patens
Pp3c3_27900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 18906370-18916369 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351593 5274 Embryophyte View MSA
123382239 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.069     Low Low
cufflinks 0.049     Low Low
cufflinks 0.911        
cufflinks 0.275        
cufflinks 0.11        
cufflinks 0.847        
cufflinks 0.063       Low
cufflinks 0.276        
cufflinks 1.578       High
cufflinks 0.173        
cufflinks 0.267        
cufflinks 0.666        
cufflinks 1.581       High
cufflinks 0.056     Low Low
cufflinks 0.023     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.637       High
cufflinks 0.108        
cufflinks 0.277        
cufflinks 0.324        
cufflinks 3.741       High
cufflinks 0.651        
cufflinks 0.198        
cufflinks 0.063     Low Low
cufflinks 0.707        
cufflinks 0.262        
cufflinks 0.061     Low Low
cufflinks 0.086        
cufflinks 1.797       High
cufflinks 0.568        

0 Strain