Gene : Pp3c3_32320 P. patens v3.3
Defline:  (1 of 3) PF08190 - pre-RNA processing PIH1/Nop17 (PIH1) Genomic Order:  1516
Name:  ? Pp3c3_32320 Secondary Identifier:  ? PAC:32942010
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c3_32320 0.5kb upstream 0.5kb upstream 3833 true Chr03: 21930565-21934397 Physcomitrium patens
Pp3c3_32320 0.5kb upstream 0.5kb upstream 500 false Chr03: 21930565-21931064 Physcomitrium patens
Pp3c3_32320 0.5kb downstream 0.5kb downstream 3833 true Chr03: 21931065-21934897 Physcomitrium patens
Pp3c3_32320 0.5kb downstream 0.5kb downstream 500 false Chr03: 21934398-21934897 Physcomitrium patens
Pp3c3_32320 1.0kb upstream 1.0kb upstream 4333 true Chr03: 21930065-21934397 Physcomitrium patens
Pp3c3_32320 1.0kb upstream 1.0kb upstream 1000 false Chr03: 21930065-21931064 Physcomitrium patens
Pp3c3_32320 1.0kb downstream 1.0kb downstream 4333 true Chr03: 21931065-21935397 Physcomitrium patens
Pp3c3_32320 1.0kb downstream 1.0kb downstream 1000 false Chr03: 21934398-21935397 Physcomitrium patens
Pp3c3_32320 2.0kb upstream 2.0kb upstream 5333 true Chr03: 21929065-21934397 Physcomitrium patens
Pp3c3_32320 2.0kb upstream 2.0kb upstream 2000 false Chr03: 21929065-21931064 Physcomitrium patens
Pp3c3_32320 2.0kb downstream 2.0kb downstream 5333 true Chr03: 21931065-21936397 Physcomitrium patens
Pp3c3_32320 2.0kb downstream 2.0kb downstream 2000 false Chr03: 21934398-21936397 Physcomitrium patens
Pp3c3_32320 5.0kb upstream 5.0kb upstream 8333 true Chr03: 21926065-21934397 Physcomitrium patens
Pp3c3_32320 5.0kb upstream 5.0kb upstream 5000 false Chr03: 21926065-21931064 Physcomitrium patens
Pp3c3_32320 5.0kb downstream 5.0kb downstream 8333 true Chr03: 21931065-21939397 Physcomitrium patens
Pp3c3_32320 5.0kb downstream 5.0kb downstream 5000 false Chr03: 21934398-21939397 Physcomitrium patens
Pp3c3_32320 10.0kb upstream 10.0kb upstream 13333 true Chr03: 21921065-21934397 Physcomitrium patens
Pp3c3_32320 10.0kb upstream 10.0kb upstream 10000 false Chr03: 21921065-21931064 Physcomitrium patens
Pp3c3_32320 10.0kb downstream 10.0kb downstream 13333 true Chr03: 21931065-21944397 Physcomitrium patens
Pp3c3_32320 10.0kb downstream 10.0kb downstream 10000 false Chr03: 21934398-21944397 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121330469 5274 Embryophyte Singleton cluster - no MSA
123427362 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.017     Low  
cufflinks 0.01     Low Low
cufflinks 0.044     Low  
cufflinks 0.043     Low  
cufflinks 0.03     Low  
cufflinks 0.013     Low  
cufflinks 0.074     Low  
cufflinks 0.041     Low  
cufflinks 0.058     Low  
cufflinks 0.084        
cufflinks 0.029     Low  
cufflinks 0.605       High
cufflinks 0.107       High
cufflinks 0.05     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low Low
cufflinks 0.053     Low  
cufflinks 0.035     Low  
cufflinks 0.152       High
cufflinks 0.09        
cufflinks 0.044     Low  
cufflinks 0.058     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.042     Low  
cufflinks 0.051     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.006     Low Low
cufflinks 0.019     Low  

0 Strain