Gene : Pp3c3_8980 P. patens v3.3
Defline:  (1 of 7) PF00487//PF11960 - Fatty acid desaturase (FA_desaturase) // Domain of unknown function (DUF3474) (DUF3474) Genomic Order:  382
Name:  ? Pp3c3_8980 Secondary Identifier:  ? PAC:32941115
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c3_8980 0.5kb upstream 0.5kb upstream 2815 true Chr03: 6338300-6341114 Physcomitrium patens
Pp3c3_8980 0.5kb upstream 0.5kb upstream 500 false Chr03: 6338300-6338799 Physcomitrium patens
Pp3c3_8980 0.5kb downstream 0.5kb downstream 2815 true Chr03: 6338800-6341614 Physcomitrium patens
Pp3c3_8980 0.5kb downstream 0.5kb downstream 500 false Chr03: 6341115-6341614 Physcomitrium patens
Pp3c3_8980 1.0kb upstream 1.0kb upstream 3315 true Chr03: 6337800-6341114 Physcomitrium patens
Pp3c3_8980 1.0kb upstream 1.0kb upstream 1000 false Chr03: 6337800-6338799 Physcomitrium patens
Pp3c3_8980 1.0kb downstream 1.0kb downstream 3315 true Chr03: 6338800-6342114 Physcomitrium patens
Pp3c3_8980 1.0kb downstream 1.0kb downstream 1000 false Chr03: 6341115-6342114 Physcomitrium patens
Pp3c3_8980 2.0kb upstream 2.0kb upstream 4315 true Chr03: 6336800-6341114 Physcomitrium patens
Pp3c3_8980 2.0kb upstream 2.0kb upstream 2000 false Chr03: 6336800-6338799 Physcomitrium patens
Pp3c3_8980 2.0kb downstream 2.0kb downstream 4315 true Chr03: 6338800-6343114 Physcomitrium patens
Pp3c3_8980 2.0kb downstream 2.0kb downstream 2000 false Chr03: 6341115-6343114 Physcomitrium patens
Pp3c3_8980 5.0kb upstream 5.0kb upstream 7315 true Chr03: 6333800-6341114 Physcomitrium patens
Pp3c3_8980 5.0kb upstream 5.0kb upstream 5000 false Chr03: 6333800-6338799 Physcomitrium patens
Pp3c3_8980 5.0kb downstream 5.0kb downstream 7315 true Chr03: 6338800-6346114 Physcomitrium patens
Pp3c3_8980 5.0kb downstream 5.0kb downstream 5000 false Chr03: 6341115-6346114 Physcomitrium patens
Pp3c3_8980 10.0kb upstream 10.0kb upstream 12315 true Chr03: 6328800-6341114 Physcomitrium patens
Pp3c3_8980 10.0kb upstream 10.0kb upstream 10000 false Chr03: 6328800-6338799 Physcomitrium patens
Pp3c3_8980 10.0kb downstream 10.0kb downstream 12315 true Chr03: 6338800-6351114 Physcomitrium patens
Pp3c3_8980 10.0kb downstream 10.0kb downstream 10000 false Chr03: 6341115-6351114 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351532 5274 Embryophyte View MSA
123426688 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.263        
cufflinks 0.062       Low
cufflinks 0.166       Low
cufflinks 0.143       Low
cufflinks 0.447        
cufflinks 0.432        
cufflinks 0.687        
cufflinks 0.38        
cufflinks 0.476        
cufflinks 0.093       Low
cufflinks 1.83       High
cufflinks 0.835        
cufflinks 0.383        
cufflinks 0.943        
cufflinks 0.7        
cufflinks 1.483       High
cufflinks 0.748        
cufflinks 0.733        
cufflinks 0.497        
cufflinks 0.455        
cufflinks 0.28        
cufflinks 0.747        
cufflinks 0.313        
cufflinks 0.455        
cufflinks 0.415        
cufflinks 0.403        
cufflinks 0.393        
cufflinks 0.296        
cufflinks 0.667        
cufflinks 0.16       Low

0 Strain