Gene : Pp3c4_27410 P. patens v3.3
Defline:  (1 of 1) PTHR10555:SF122 - SORTING NEXIN 1 Genomic Order:  1289
Name:  ? Pp3c4_27410 Secondary Identifier:  ? PAC:32922686
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c4_27410 0.5kb upstream 0.5kb upstream 6608 true Chr04: 18776128-18782735 Physcomitrium patens
Pp3c4_27410 0.5kb upstream 0.5kb upstream 500 false Chr04: 18782236-18782735 Physcomitrium patens
Pp3c4_27410 0.5kb downstream 0.5kb downstream 6608 true Chr04: 18775628-18782235 Physcomitrium patens
Pp3c4_27410 0.5kb downstream 0.5kb downstream 500 false Chr04: 18775628-18776127 Physcomitrium patens
Pp3c4_27410 1.0kb upstream 1.0kb upstream 7108 true Chr04: 18776128-18783235 Physcomitrium patens
Pp3c4_27410 1.0kb upstream 1.0kb upstream 1000 false Chr04: 18782236-18783235 Physcomitrium patens
Pp3c4_27410 1.0kb downstream 1.0kb downstream 7108 true Chr04: 18775128-18782235 Physcomitrium patens
Pp3c4_27410 1.0kb downstream 1.0kb downstream 1000 false Chr04: 18775128-18776127 Physcomitrium patens
Pp3c4_27410 2.0kb upstream 2.0kb upstream 8108 true Chr04: 18776128-18784235 Physcomitrium patens
Pp3c4_27410 2.0kb upstream 2.0kb upstream 2000 false Chr04: 18782236-18784235 Physcomitrium patens
Pp3c4_27410 2.0kb downstream 2.0kb downstream 8108 true Chr04: 18774128-18782235 Physcomitrium patens
Pp3c4_27410 2.0kb downstream 2.0kb downstream 2000 false Chr04: 18774128-18776127 Physcomitrium patens
Pp3c4_27410 5.0kb upstream 5.0kb upstream 11108 true Chr04: 18776128-18787235 Physcomitrium patens
Pp3c4_27410 5.0kb upstream 5.0kb upstream 5000 false Chr04: 18782236-18787235 Physcomitrium patens
Pp3c4_27410 5.0kb downstream 5.0kb downstream 11108 true Chr04: 18771128-18782235 Physcomitrium patens
Pp3c4_27410 5.0kb downstream 5.0kb downstream 5000 false Chr04: 18771128-18776127 Physcomitrium patens
Pp3c4_27410 10.0kb upstream 10.0kb upstream 16108 true Chr04: 18776128-18792235 Physcomitrium patens
Pp3c4_27410 10.0kb upstream 10.0kb upstream 10000 false Chr04: 18782236-18792235 Physcomitrium patens
Pp3c4_27410 10.0kb downstream 10.0kb downstream 16108 true Chr04: 18766128-18782235 Physcomitrium patens
Pp3c4_27410 10.0kb downstream 10.0kb downstream 10000 false Chr04: 18766128-18776127 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345603 5274 Embryophyte View MSA
123428162 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.889        
cufflinks 1.481       Low
cufflinks 2.303        
cufflinks 2.338        
cufflinks 1.667        
cufflinks 2.6       High
cufflinks 2.132        
cufflinks 2.036        
cufflinks 2.387        
cufflinks 2.462        
cufflinks 2.174        
cufflinks 2.138        
cufflinks 1.893        
cufflinks 2.331        
cufflinks 1.598        
cufflinks 1.581        
cufflinks 1.91        
cufflinks 2.63       High
cufflinks 1.682        
cufflinks 2.606       High
cufflinks 1.428       Low
cufflinks 1.151       Low
cufflinks 2.218        
cufflinks 2.006        
cufflinks 2.366        
cufflinks 1.483       Low
cufflinks 2.564       High
cufflinks 2.12        
cufflinks 2.148        
cufflinks 1.215       Low

0 Strain