Gene : Pp3c4_27650 P. patens v3.3
Defline:  (1 of 2) PTHR19229:SF36 - PROTEIN ABT-4 Genomic Order:  1302
Name:  ? Pp3c4_27650 Secondary Identifier:  ? PAC:32922341
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c4_27650 0.5kb upstream 0.5kb upstream 14649 true Chr04: 18980653-18995301 Physcomitrium patens
Pp3c4_27650 0.5kb upstream 0.5kb upstream 500 false Chr04: 18980653-18981152 Physcomitrium patens
Pp3c4_27650 0.5kb downstream 0.5kb downstream 14649 true Chr04: 18981153-18995801 Physcomitrium patens
Pp3c4_27650 0.5kb downstream 0.5kb downstream 500 false Chr04: 18995302-18995801 Physcomitrium patens
Pp3c4_27650 1.0kb upstream 1.0kb upstream 15149 true Chr04: 18980153-18995301 Physcomitrium patens
Pp3c4_27650 1.0kb upstream 1.0kb upstream 1000 false Chr04: 18980153-18981152 Physcomitrium patens
Pp3c4_27650 1.0kb downstream 1.0kb downstream 15149 true Chr04: 18981153-18996301 Physcomitrium patens
Pp3c4_27650 1.0kb downstream 1.0kb downstream 1000 false Chr04: 18995302-18996301 Physcomitrium patens
Pp3c4_27650 2.0kb upstream 2.0kb upstream 16149 true Chr04: 18979153-18995301 Physcomitrium patens
Pp3c4_27650 2.0kb upstream 2.0kb upstream 2000 false Chr04: 18979153-18981152 Physcomitrium patens
Pp3c4_27650 2.0kb downstream 2.0kb downstream 16149 true Chr04: 18981153-18997301 Physcomitrium patens
Pp3c4_27650 2.0kb downstream 2.0kb downstream 2000 false Chr04: 18995302-18997301 Physcomitrium patens
Pp3c4_27650 5.0kb upstream 5.0kb upstream 19149 true Chr04: 18976153-18995301 Physcomitrium patens
Pp3c4_27650 5.0kb upstream 5.0kb upstream 5000 false Chr04: 18976153-18981152 Physcomitrium patens
Pp3c4_27650 5.0kb downstream 5.0kb downstream 19149 true Chr04: 18981153-19000301 Physcomitrium patens
Pp3c4_27650 5.0kb downstream 5.0kb downstream 5000 false Chr04: 18995302-19000301 Physcomitrium patens
Pp3c4_27650 10.0kb upstream 10.0kb upstream 24149 true Chr04: 18971153-18995301 Physcomitrium patens
Pp3c4_27650 10.0kb upstream 10.0kb upstream 10000 false Chr04: 18971153-18981152 Physcomitrium patens
Pp3c4_27650 10.0kb downstream 10.0kb downstream 24149 true Chr04: 18981153-19005301 Physcomitrium patens
Pp3c4_27650 10.0kb downstream 10.0kb downstream 10000 false Chr04: 18995302-19005301 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429075 5275 Viridiplantae View MSA
121345531 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.573       High
cufflinks 0.967        
cufflinks 2.109       High
cufflinks 1.511        
cufflinks 0.797       Low
cufflinks 1.515        
cufflinks 0.698       Low
cufflinks 1.168        
cufflinks 1.01        
cufflinks 0.818       Low
cufflinks 0.852        
cufflinks 1.655        
cufflinks 1.349        
cufflinks 0.82       Low
cufflinks 1.152        
cufflinks 0.815       Low
cufflinks 0.711       Low
cufflinks 1.61        
cufflinks 1.392        
cufflinks 1.565        
cufflinks 1.215        
cufflinks 1.201        
cufflinks 1.896       High
cufflinks 1.57        
cufflinks 1.276        
cufflinks 0.868        
cufflinks 1.367        
cufflinks 0.998        
cufflinks 1.027        
cufflinks 0.97        

0 Strain