Gene : Pp3c4_2290 P. patens v3.3
Defline:  (1 of 4) PTHR21580:SF10 - SPERM-TAIL PG-RICH REPEAT-CONTAINING PROTEIN 2 Genomic Order:  110
Name:  ? Pp3c4_2290 Secondary Identifier:  ? PAC:32921683
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c4_2290 0.5kb upstream 0.5kb upstream 3025 true Chr04: 1378706-1381730 Physcomitrium patens
Pp3c4_2290 0.5kb upstream 0.5kb upstream 500 false Chr04: 1378706-1379205 Physcomitrium patens
Pp3c4_2290 0.5kb downstream 0.5kb downstream 3025 true Chr04: 1379206-1382230 Physcomitrium patens
Pp3c4_2290 0.5kb downstream 0.5kb downstream 500 false Chr04: 1381731-1382230 Physcomitrium patens
Pp3c4_2290 1.0kb upstream 1.0kb upstream 3525 true Chr04: 1378206-1381730 Physcomitrium patens
Pp3c4_2290 1.0kb upstream 1.0kb upstream 1000 false Chr04: 1378206-1379205 Physcomitrium patens
Pp3c4_2290 1.0kb downstream 1.0kb downstream 3525 true Chr04: 1379206-1382730 Physcomitrium patens
Pp3c4_2290 1.0kb downstream 1.0kb downstream 1000 false Chr04: 1381731-1382730 Physcomitrium patens
Pp3c4_2290 2.0kb upstream 2.0kb upstream 4525 true Chr04: 1377206-1381730 Physcomitrium patens
Pp3c4_2290 2.0kb upstream 2.0kb upstream 2000 false Chr04: 1377206-1379205 Physcomitrium patens
Pp3c4_2290 2.0kb downstream 2.0kb downstream 4525 true Chr04: 1379206-1383730 Physcomitrium patens
Pp3c4_2290 2.0kb downstream 2.0kb downstream 2000 false Chr04: 1381731-1383730 Physcomitrium patens
Pp3c4_2290 5.0kb upstream 5.0kb upstream 7525 true Chr04: 1374206-1381730 Physcomitrium patens
Pp3c4_2290 5.0kb upstream 5.0kb upstream 5000 false Chr04: 1374206-1379205 Physcomitrium patens
Pp3c4_2290 5.0kb downstream 5.0kb downstream 7525 true Chr04: 1379206-1386730 Physcomitrium patens
Pp3c4_2290 5.0kb downstream 5.0kb downstream 5000 false Chr04: 1381731-1386730 Physcomitrium patens
Pp3c4_2290 10.0kb upstream 10.0kb upstream 12525 true Chr04: 1369206-1381730 Physcomitrium patens
Pp3c4_2290 10.0kb upstream 10.0kb upstream 10000 false Chr04: 1369206-1379205 Physcomitrium patens
Pp3c4_2290 10.0kb downstream 10.0kb downstream 12525 true Chr04: 1379206-1391730 Physcomitrium patens
Pp3c4_2290 10.0kb downstream 10.0kb downstream 10000 false Chr04: 1381731-1391730 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343779 5274 Embryophyte View MSA
123427784 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.027     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.05     Low High
cufflinks 0.065     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.005     Low Low
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.009     Low  
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain