Gene : Pp3c4_24420 P. patens v3.3
Defline:  (1 of 15) PTHR31161:SF2 - SEC1/MUNC18-LIKE (SM) FAMILY PROTEIN Genomic Order:  1165
Name:  ? Pp3c4_24420 Secondary Identifier:  ? PAC:32918958
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c4_24420 0.5kb upstream 0.5kb upstream 2813 true Chr04: 16378317-16381129 Physcomitrium patens
Pp3c4_24420 0.5kb upstream 0.5kb upstream 500 false Chr04: 16378317-16378816 Physcomitrium patens
Pp3c4_24420 0.5kb downstream 0.5kb downstream 2813 true Chr04: 16378817-16381629 Physcomitrium patens
Pp3c4_24420 0.5kb downstream 0.5kb downstream 500 false Chr04: 16381130-16381629 Physcomitrium patens
Pp3c4_24420 1.0kb upstream 1.0kb upstream 3313 true Chr04: 16377817-16381129 Physcomitrium patens
Pp3c4_24420 1.0kb upstream 1.0kb upstream 1000 false Chr04: 16377817-16378816 Physcomitrium patens
Pp3c4_24420 1.0kb downstream 1.0kb downstream 3313 true Chr04: 16378817-16382129 Physcomitrium patens
Pp3c4_24420 1.0kb downstream 1.0kb downstream 1000 false Chr04: 16381130-16382129 Physcomitrium patens
Pp3c4_24420 2.0kb upstream 2.0kb upstream 4313 true Chr04: 16376817-16381129 Physcomitrium patens
Pp3c4_24420 2.0kb upstream 2.0kb upstream 2000 false Chr04: 16376817-16378816 Physcomitrium patens
Pp3c4_24420 2.0kb downstream 2.0kb downstream 4313 true Chr04: 16378817-16383129 Physcomitrium patens
Pp3c4_24420 2.0kb downstream 2.0kb downstream 2000 false Chr04: 16381130-16383129 Physcomitrium patens
Pp3c4_24420 5.0kb upstream 5.0kb upstream 7313 true Chr04: 16373817-16381129 Physcomitrium patens
Pp3c4_24420 5.0kb upstream 5.0kb upstream 5000 false Chr04: 16373817-16378816 Physcomitrium patens
Pp3c4_24420 5.0kb downstream 5.0kb downstream 7313 true Chr04: 16378817-16386129 Physcomitrium patens
Pp3c4_24420 5.0kb downstream 5.0kb downstream 5000 false Chr04: 16381130-16386129 Physcomitrium patens
Pp3c4_24420 10.0kb upstream 10.0kb upstream 12313 true Chr04: 16368817-16381129 Physcomitrium patens
Pp3c4_24420 10.0kb upstream 10.0kb upstream 10000 false Chr04: 16368817-16378816 Physcomitrium patens
Pp3c4_24420 10.0kb downstream 10.0kb downstream 12313 true Chr04: 16378817-16391129 Physcomitrium patens
Pp3c4_24420 10.0kb downstream 10.0kb downstream 10000 false Chr04: 16381130-16391129 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350566 5274 Embryophyte View MSA
123381797 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 100.799     High High
cufflinks 184.053     High High
cufflinks 1.268        
cufflinks 9.476        
cufflinks 2.463        
cufflinks 0.312       Low
cufflinks 32.295     High High
cufflinks 1.993        
cufflinks 14.378        
cufflinks 3.433        
cufflinks 1.905        
cufflinks 36.882     High High
cufflinks 9.798        
cufflinks 0.411       Low
cufflinks 4.567        
cufflinks 4.149        
cufflinks 0.489       Low
cufflinks 2.132        
cufflinks 2.38        
cufflinks 0.473       Low
cufflinks 1.147        
cufflinks 0.709        
cufflinks 0.188       Low
cufflinks 1.434        
cufflinks 2.394        
cufflinks 3.243        
cufflinks 0.395       Low
cufflinks 1.227        
cufflinks 0.573        
cufflinks 2.412        

0 Strain