Gene : Pp3c4_3410 P. patens v3.3
Defline:  (1 of 3) PTHR10209:SF226 - 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN Genomic Order:  158
Name:  ? Pp3c4_3410 Secondary Identifier:  ? PAC:32922577
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY1F-823 Physcomitrium patens pathologic  
Ppatens PWY-5152 Physcomitrium patens pathologic  
Ppatens PWY-6787 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c4_3410 0.5kb upstream 0.5kb upstream 3963 true Chr04: 2273531-2277493 Physcomitrium patens
Pp3c4_3410 0.5kb upstream 0.5kb upstream 500 false Chr04: 2273531-2274030 Physcomitrium patens
Pp3c4_3410 0.5kb downstream 0.5kb downstream 3963 true Chr04: 2274031-2277993 Physcomitrium patens
Pp3c4_3410 0.5kb downstream 0.5kb downstream 500 false Chr04: 2277494-2277993 Physcomitrium patens
Pp3c4_3410 1.0kb upstream 1.0kb upstream 4463 true Chr04: 2273031-2277493 Physcomitrium patens
Pp3c4_3410 1.0kb upstream 1.0kb upstream 1000 false Chr04: 2273031-2274030 Physcomitrium patens
Pp3c4_3410 1.0kb downstream 1.0kb downstream 4463 true Chr04: 2274031-2278493 Physcomitrium patens
Pp3c4_3410 1.0kb downstream 1.0kb downstream 1000 false Chr04: 2277494-2278493 Physcomitrium patens
Pp3c4_3410 2.0kb upstream 2.0kb upstream 5463 true Chr04: 2272031-2277493 Physcomitrium patens
Pp3c4_3410 2.0kb upstream 2.0kb upstream 2000 false Chr04: 2272031-2274030 Physcomitrium patens
Pp3c4_3410 2.0kb downstream 2.0kb downstream 5463 true Chr04: 2274031-2279493 Physcomitrium patens
Pp3c4_3410 2.0kb downstream 2.0kb downstream 2000 false Chr04: 2277494-2279493 Physcomitrium patens
Pp3c4_3410 5.0kb upstream 5.0kb upstream 8463 true Chr04: 2269031-2277493 Physcomitrium patens
Pp3c4_3410 5.0kb upstream 5.0kb upstream 5000 false Chr04: 2269031-2274030 Physcomitrium patens
Pp3c4_3410 5.0kb downstream 5.0kb downstream 8463 true Chr04: 2274031-2282493 Physcomitrium patens
Pp3c4_3410 5.0kb downstream 5.0kb downstream 5000 false Chr04: 2277494-2282493 Physcomitrium patens
Pp3c4_3410 10.0kb upstream 10.0kb upstream 13463 true Chr04: 2264031-2277493 Physcomitrium patens
Pp3c4_3410 10.0kb upstream 10.0kb upstream 10000 false Chr04: 2264031-2274030 Physcomitrium patens
Pp3c4_3410 10.0kb downstream 10.0kb downstream 13463 true Chr04: 2274031-2287493 Physcomitrium patens
Pp3c4_3410 10.0kb downstream 10.0kb downstream 10000 false Chr04: 2277494-2287493 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347125 5274 Embryophyte View MSA
123380497 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain