Gene : Pp3c5_10160 P. patens v3.3
Defline:  (1 of 39) PF00612 - IQ calmodulin-binding motif (IQ) Genomic Order:  466
Name:  ? Pp3c5_10160 Secondary Identifier:  ? PAC:32953254
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c5_10160 0.5kb upstream 0.5kb upstream 11083 true Chr05: 7386087-7397169 Physcomitrium patens
Pp3c5_10160 0.5kb upstream 0.5kb upstream 500 false Chr05: 7396670-7397169 Physcomitrium patens
Pp3c5_10160 0.5kb downstream 0.5kb downstream 11083 true Chr05: 7385587-7396669 Physcomitrium patens
Pp3c5_10160 0.5kb downstream 0.5kb downstream 500 false Chr05: 7385587-7386086 Physcomitrium patens
Pp3c5_10160 1.0kb upstream 1.0kb upstream 11583 true Chr05: 7386087-7397669 Physcomitrium patens
Pp3c5_10160 1.0kb upstream 1.0kb upstream 1000 false Chr05: 7396670-7397669 Physcomitrium patens
Pp3c5_10160 1.0kb downstream 1.0kb downstream 11583 true Chr05: 7385087-7396669 Physcomitrium patens
Pp3c5_10160 1.0kb downstream 1.0kb downstream 1000 false Chr05: 7385087-7386086 Physcomitrium patens
Pp3c5_10160 2.0kb upstream 2.0kb upstream 12583 true Chr05: 7386087-7398669 Physcomitrium patens
Pp3c5_10160 2.0kb upstream 2.0kb upstream 2000 false Chr05: 7396670-7398669 Physcomitrium patens
Pp3c5_10160 2.0kb downstream 2.0kb downstream 12583 true Chr05: 7384087-7396669 Physcomitrium patens
Pp3c5_10160 2.0kb downstream 2.0kb downstream 2000 false Chr05: 7384087-7386086 Physcomitrium patens
Pp3c5_10160 5.0kb upstream 5.0kb upstream 15583 true Chr05: 7386087-7401669 Physcomitrium patens
Pp3c5_10160 5.0kb upstream 5.0kb upstream 5000 false Chr05: 7396670-7401669 Physcomitrium patens
Pp3c5_10160 5.0kb downstream 5.0kb downstream 15583 true Chr05: 7381087-7396669 Physcomitrium patens
Pp3c5_10160 5.0kb downstream 5.0kb downstream 5000 false Chr05: 7381087-7386086 Physcomitrium patens
Pp3c5_10160 10.0kb upstream 10.0kb upstream 20583 true Chr05: 7386087-7406669 Physcomitrium patens
Pp3c5_10160 10.0kb upstream 10.0kb upstream 10000 false Chr05: 7396670-7406669 Physcomitrium patens
Pp3c5_10160 10.0kb downstream 10.0kb downstream 20583 true Chr05: 7376087-7396669 Physcomitrium patens
Pp3c5_10160 10.0kb downstream 10.0kb downstream 10000 false Chr05: 7376087-7386086 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342379 5274 Embryophyte View MSA
123378957 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.101        
cufflinks 0.064       Low
cufflinks 0.258       High
cufflinks 0.144        
cufflinks 0.139        
cufflinks 0.251       High
cufflinks 0.081       Low
cufflinks 0.204        
cufflinks 0.132        
cufflinks 0.172        
cufflinks 0.172        
cufflinks 0.224       High
cufflinks 0.095       Low
cufflinks 0.169        
cufflinks 0.18        
cufflinks 0.11        
cufflinks 0.043     Low Low
cufflinks 0.172        
cufflinks 0.166        
cufflinks 0.24       High
cufflinks 0.131        
cufflinks 0.134        
cufflinks 0.201        
cufflinks 0.14        
cufflinks 0.099        
cufflinks 0.223       High
cufflinks 0.148        
cufflinks 0.199        
cufflinks 0.143        
cufflinks 0.197        

0 Strain