Gene : Pp3c5_17160 P. patens v3.3
Defline:  (1 of 1) 3.2.1.17//3.4.19.11 - Lysozyme / Muramidase // Gamma-D-glutamyl-meso-diaminopimelate peptidase / Gamma-D-glutamyl-meso-diaminopimelate peptidase I Genomic Order:  805
Name:  ? Pp3c5_17160 Secondary Identifier:  ? PAC:32953592
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c5_17160 0.5kb upstream 0.5kb upstream 3914 true Chr05: 11807556-11811469 Physcomitrium patens
Pp3c5_17160 0.5kb upstream 0.5kb upstream 500 false Chr05: 11807556-11808055 Physcomitrium patens
Pp3c5_17160 0.5kb downstream 0.5kb downstream 3914 true Chr05: 11808056-11811969 Physcomitrium patens
Pp3c5_17160 0.5kb downstream 0.5kb downstream 500 false Chr05: 11811470-11811969 Physcomitrium patens
Pp3c5_17160 1.0kb upstream 1.0kb upstream 4414 true Chr05: 11807056-11811469 Physcomitrium patens
Pp3c5_17160 1.0kb upstream 1.0kb upstream 1000 false Chr05: 11807056-11808055 Physcomitrium patens
Pp3c5_17160 1.0kb downstream 1.0kb downstream 4414 true Chr05: 11808056-11812469 Physcomitrium patens
Pp3c5_17160 1.0kb downstream 1.0kb downstream 1000 false Chr05: 11811470-11812469 Physcomitrium patens
Pp3c5_17160 2.0kb upstream 2.0kb upstream 5414 true Chr05: 11806056-11811469 Physcomitrium patens
Pp3c5_17160 2.0kb upstream 2.0kb upstream 2000 false Chr05: 11806056-11808055 Physcomitrium patens
Pp3c5_17160 2.0kb downstream 2.0kb downstream 5414 true Chr05: 11808056-11813469 Physcomitrium patens
Pp3c5_17160 2.0kb downstream 2.0kb downstream 2000 false Chr05: 11811470-11813469 Physcomitrium patens
Pp3c5_17160 5.0kb upstream 5.0kb upstream 8414 true Chr05: 11803056-11811469 Physcomitrium patens
Pp3c5_17160 5.0kb upstream 5.0kb upstream 5000 false Chr05: 11803056-11808055 Physcomitrium patens
Pp3c5_17160 5.0kb downstream 5.0kb downstream 8414 true Chr05: 11808056-11816469 Physcomitrium patens
Pp3c5_17160 5.0kb downstream 5.0kb downstream 5000 false Chr05: 11811470-11816469 Physcomitrium patens
Pp3c5_17160 10.0kb upstream 10.0kb upstream 13414 true Chr05: 11798056-11811469 Physcomitrium patens
Pp3c5_17160 10.0kb upstream 10.0kb upstream 10000 false Chr05: 11798056-11808055 Physcomitrium patens
Pp3c5_17160 10.0kb downstream 10.0kb downstream 13414 true Chr05: 11808056-11821469 Physcomitrium patens
Pp3c5_17160 10.0kb downstream 10.0kb downstream 10000 false Chr05: 11811470-11821469 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343226 5274 Embryophyte View MSA
123379527 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.471        
cufflinks 4.857        
cufflinks 3.996        
cufflinks 2.516        
cufflinks 1.473       Low
cufflinks 3.512        
cufflinks 4.683        
cufflinks 4.441        
cufflinks 3.639        
cufflinks 5.094        
cufflinks 4.943        
cufflinks 4.03        
cufflinks 3.885        
cufflinks 3.64        
cufflinks 3.375        
cufflinks 2.733        
cufflinks 4.195        
cufflinks 1.258       Low
cufflinks 4.292        
cufflinks 6.301       High
cufflinks 5.134        
cufflinks 1.676       Low
cufflinks 4.21        
cufflinks 5.313        
cufflinks 1.334       Low
cufflinks 4.032        
cufflinks 3.916        
cufflinks 3.891        
cufflinks 4.991        
cufflinks 3.432        

0 Strain