Gene : Pp3c5_16220 P. patens v3.3
Defline:  (1 of 2) 2.7.8.7 - Holo-[acyl-carrier-protein] synthase / PPTase Genomic Order:  752
Name:  ? Pp3c5_16220 Secondary Identifier:  ? PAC:32953156
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-6012-1 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c5_16220 0.5kb upstream 0.5kb upstream 2892 true Chr05: 11303530-11306421 Physcomitrium patens
Pp3c5_16220 0.5kb upstream 0.5kb upstream 500 false Chr05: 11305922-11306421 Physcomitrium patens
Pp3c5_16220 0.5kb downstream 0.5kb downstream 2892 true Chr05: 11303030-11305921 Physcomitrium patens
Pp3c5_16220 0.5kb downstream 0.5kb downstream 500 false Chr05: 11303030-11303529 Physcomitrium patens
Pp3c5_16220 1.0kb upstream 1.0kb upstream 3392 true Chr05: 11303530-11306921 Physcomitrium patens
Pp3c5_16220 1.0kb upstream 1.0kb upstream 1000 false Chr05: 11305922-11306921 Physcomitrium patens
Pp3c5_16220 1.0kb downstream 1.0kb downstream 3392 true Chr05: 11302530-11305921 Physcomitrium patens
Pp3c5_16220 1.0kb downstream 1.0kb downstream 1000 false Chr05: 11302530-11303529 Physcomitrium patens
Pp3c5_16220 2.0kb upstream 2.0kb upstream 4392 true Chr05: 11303530-11307921 Physcomitrium patens
Pp3c5_16220 2.0kb upstream 2.0kb upstream 2000 false Chr05: 11305922-11307921 Physcomitrium patens
Pp3c5_16220 2.0kb downstream 2.0kb downstream 4392 true Chr05: 11301530-11305921 Physcomitrium patens
Pp3c5_16220 2.0kb downstream 2.0kb downstream 2000 false Chr05: 11301530-11303529 Physcomitrium patens
Pp3c5_16220 5.0kb upstream 5.0kb upstream 7392 true Chr05: 11303530-11310921 Physcomitrium patens
Pp3c5_16220 5.0kb upstream 5.0kb upstream 5000 false Chr05: 11305922-11310921 Physcomitrium patens
Pp3c5_16220 5.0kb downstream 5.0kb downstream 7392 true Chr05: 11298530-11305921 Physcomitrium patens
Pp3c5_16220 5.0kb downstream 5.0kb downstream 5000 false Chr05: 11298530-11303529 Physcomitrium patens
Pp3c5_16220 10.0kb upstream 10.0kb upstream 12392 true Chr05: 11303530-11315921 Physcomitrium patens
Pp3c5_16220 10.0kb upstream 10.0kb upstream 10000 false Chr05: 11305922-11315921 Physcomitrium patens
Pp3c5_16220 10.0kb downstream 10.0kb downstream 12392 true Chr05: 11293530-11305921 Physcomitrium patens
Pp3c5_16220 10.0kb downstream 10.0kb downstream 10000 false Chr05: 11293530-11303529 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429078 5275 Viridiplantae View MSA
121348212 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.087       Low
cufflinks 0.075       Low
cufflinks 0.364       High
cufflinks 0.076     Low Low
cufflinks 0.323       High
cufflinks 0.317       High
cufflinks 0.124        
cufflinks 0.111        
cufflinks 0.19        
cufflinks 0.14        
cufflinks 0.155        
cufflinks 0.377       High
cufflinks 0.124        
cufflinks 0.15        
cufflinks 0.109        
cufflinks 0.151        
cufflinks 0.402       High
cufflinks 0.182        
cufflinks 0.093       Low
cufflinks 0.183        
cufflinks 0.089       Low
cufflinks 0.192        
cufflinks 0.095       Low
cufflinks 0.228        
cufflinks 0.334       High
cufflinks 0.31       High
cufflinks 0.183        
cufflinks 0.167        
cufflinks 0.227        
cufflinks 0.326       High

0 Strain