Gene : Pp3c5_2520 P. patens v3.3
Defline:  (1 of 2) PTHR12931 - UBIQUITIN THIOLESTERASE PROTEIN OTUB Genomic Order:  117
Name:  ? Pp3c5_2520 Secondary Identifier:  ? PAC:32953463
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c5_2520 0.5kb upstream 0.5kb upstream 4841 true Chr05: 1578606-1583446 Physcomitrium patens
Pp3c5_2520 0.5kb upstream 0.5kb upstream 500 false Chr05: 1582947-1583446 Physcomitrium patens
Pp3c5_2520 0.5kb downstream 0.5kb downstream 4841 true Chr05: 1578106-1582946 Physcomitrium patens
Pp3c5_2520 0.5kb downstream 0.5kb downstream 500 false Chr05: 1578106-1578605 Physcomitrium patens
Pp3c5_2520 1.0kb upstream 1.0kb upstream 5341 true Chr05: 1578606-1583946 Physcomitrium patens
Pp3c5_2520 1.0kb upstream 1.0kb upstream 1000 false Chr05: 1582947-1583946 Physcomitrium patens
Pp3c5_2520 1.0kb downstream 1.0kb downstream 5341 true Chr05: 1577606-1582946 Physcomitrium patens
Pp3c5_2520 1.0kb downstream 1.0kb downstream 1000 false Chr05: 1577606-1578605 Physcomitrium patens
Pp3c5_2520 2.0kb upstream 2.0kb upstream 6341 true Chr05: 1578606-1584946 Physcomitrium patens
Pp3c5_2520 2.0kb upstream 2.0kb upstream 2000 false Chr05: 1582947-1584946 Physcomitrium patens
Pp3c5_2520 2.0kb downstream 2.0kb downstream 6341 true Chr05: 1576606-1582946 Physcomitrium patens
Pp3c5_2520 2.0kb downstream 2.0kb downstream 2000 false Chr05: 1576606-1578605 Physcomitrium patens
Pp3c5_2520 5.0kb upstream 5.0kb upstream 9341 true Chr05: 1578606-1587946 Physcomitrium patens
Pp3c5_2520 5.0kb upstream 5.0kb upstream 5000 false Chr05: 1582947-1587946 Physcomitrium patens
Pp3c5_2520 5.0kb downstream 5.0kb downstream 9341 true Chr05: 1573606-1582946 Physcomitrium patens
Pp3c5_2520 5.0kb downstream 5.0kb downstream 5000 false Chr05: 1573606-1578605 Physcomitrium patens
Pp3c5_2520 10.0kb upstream 10.0kb upstream 14341 true Chr05: 1578606-1592946 Physcomitrium patens
Pp3c5_2520 10.0kb upstream 10.0kb upstream 10000 false Chr05: 1582947-1592946 Physcomitrium patens
Pp3c5_2520 10.0kb downstream 10.0kb downstream 14341 true Chr05: 1568606-1582946 Physcomitrium patens
Pp3c5_2520 10.0kb downstream 10.0kb downstream 10000 false Chr05: 1568606-1578605 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344850 5274 Embryophyte View MSA
123424451 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.185        
cufflinks 0.232        
cufflinks 0.209        
cufflinks 0.452       High
cufflinks 0.177        
cufflinks 0.13       Low
cufflinks 0.26        
cufflinks 0.099       Low
cufflinks 0.476       High
cufflinks 0.319        
cufflinks 0.087       Low
cufflinks 0.286        
cufflinks 0.363        
cufflinks 0.122       Low
cufflinks 0.173        
cufflinks 0.238        
cufflinks 0.305        
cufflinks 0.494       High
cufflinks 0.136       Low
cufflinks 0.384        
cufflinks 0.379        
cufflinks 0.413        
cufflinks 0.332        
cufflinks 0.402        
cufflinks 0.401        
cufflinks 0.524       High
cufflinks 0.341        
cufflinks 0.091       Low
cufflinks 0.12       Low
cufflinks 0.524       High

0 Strain