Gene : Pp3c5_3920 P. patens v3.3
Defline:  (1 of 1) PF00072//PF08447 - Response regulator receiver domain (Response_reg) // PAS fold (PAS_3) Genomic Order:  189
Name:  ? Pp3c5_3920 Secondary Identifier:  ? PAC:32955457
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c5_3920 0.5kb upstream 0.5kb upstream 5129 true Chr05: 2678021-2683149 Physcomitrium patens
Pp3c5_3920 0.5kb upstream 0.5kb upstream 500 false Chr05: 2678021-2678520 Physcomitrium patens
Pp3c5_3920 0.5kb downstream 0.5kb downstream 5129 true Chr05: 2678521-2683649 Physcomitrium patens
Pp3c5_3920 0.5kb downstream 0.5kb downstream 500 false Chr05: 2683150-2683649 Physcomitrium patens
Pp3c5_3920 1.0kb upstream 1.0kb upstream 5629 true Chr05: 2677521-2683149 Physcomitrium patens
Pp3c5_3920 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2677521-2678520 Physcomitrium patens
Pp3c5_3920 1.0kb downstream 1.0kb downstream 5629 true Chr05: 2678521-2684149 Physcomitrium patens
Pp3c5_3920 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2683150-2684149 Physcomitrium patens
Pp3c5_3920 2.0kb upstream 2.0kb upstream 6629 true Chr05: 2676521-2683149 Physcomitrium patens
Pp3c5_3920 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2676521-2678520 Physcomitrium patens
Pp3c5_3920 2.0kb downstream 2.0kb downstream 6629 true Chr05: 2678521-2685149 Physcomitrium patens
Pp3c5_3920 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2683150-2685149 Physcomitrium patens
Pp3c5_3920 5.0kb upstream 5.0kb upstream 9629 true Chr05: 2673521-2683149 Physcomitrium patens
Pp3c5_3920 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2673521-2678520 Physcomitrium patens
Pp3c5_3920 5.0kb downstream 5.0kb downstream 9629 true Chr05: 2678521-2688149 Physcomitrium patens
Pp3c5_3920 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2683150-2688149 Physcomitrium patens
Pp3c5_3920 10.0kb upstream 10.0kb upstream 14629 true Chr05: 2668521-2683149 Physcomitrium patens
Pp3c5_3920 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2668521-2678520 Physcomitrium patens
Pp3c5_3920 10.0kb downstream 10.0kb downstream 14629 true Chr05: 2678521-2693149 Physcomitrium patens
Pp3c5_3920 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2683150-2693149 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343309 5274 Embryophyte View MSA
123379590 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.039     Low  
cufflinks 0.003     Low Low
cufflinks 0.055        
cufflinks 0.005     Low  
cufflinks 0.092        
cufflinks 0.005     Low  
cufflinks 0.005     Low  
cufflinks 0.257       High
cufflinks 0.108       High
cufflinks 0.031     Low  
cufflinks 0.849       High
cufflinks 0.002     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  
cufflinks 0.002     Low Low
cufflinks 0.018     Low  
cufflinks 0.062        
cufflinks 0.125       High
cufflinks 0.004     Low  
cufflinks 0.002     Low Low
cufflinks 0.036     Low  
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  

0 Strain