Gene : Pp3c5_5140 P. patens v3.3
Defline:  (1 of 2) 3.4.16.4 - Serine-type D-Ala-D-Ala carboxypeptidase / DD-transpeptidase Genomic Order:  251
Name:  ? Pp3c5_5140 Secondary Identifier:  ? PAC:32952881
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c5_5140 0.5kb upstream 0.5kb upstream 6103 true Chr05: 3352667-3358769 Physcomitrium patens
Pp3c5_5140 0.5kb upstream 0.5kb upstream 500 false Chr05: 3358270-3358769 Physcomitrium patens
Pp3c5_5140 0.5kb downstream 0.5kb downstream 6103 true Chr05: 3352167-3358269 Physcomitrium patens
Pp3c5_5140 0.5kb downstream 0.5kb downstream 500 false Chr05: 3352167-3352666 Physcomitrium patens
Pp3c5_5140 1.0kb upstream 1.0kb upstream 6603 true Chr05: 3352667-3359269 Physcomitrium patens
Pp3c5_5140 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3358270-3359269 Physcomitrium patens
Pp3c5_5140 1.0kb downstream 1.0kb downstream 6603 true Chr05: 3351667-3358269 Physcomitrium patens
Pp3c5_5140 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3351667-3352666 Physcomitrium patens
Pp3c5_5140 2.0kb upstream 2.0kb upstream 7603 true Chr05: 3352667-3360269 Physcomitrium patens
Pp3c5_5140 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3358270-3360269 Physcomitrium patens
Pp3c5_5140 2.0kb downstream 2.0kb downstream 7603 true Chr05: 3350667-3358269 Physcomitrium patens
Pp3c5_5140 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3350667-3352666 Physcomitrium patens
Pp3c5_5140 5.0kb upstream 5.0kb upstream 10603 true Chr05: 3352667-3363269 Physcomitrium patens
Pp3c5_5140 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3358270-3363269 Physcomitrium patens
Pp3c5_5140 5.0kb downstream 5.0kb downstream 10603 true Chr05: 3347667-3358269 Physcomitrium patens
Pp3c5_5140 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3347667-3352666 Physcomitrium patens
Pp3c5_5140 10.0kb upstream 10.0kb upstream 15603 true Chr05: 3352667-3368269 Physcomitrium patens
Pp3c5_5140 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3358270-3368269 Physcomitrium patens
Pp3c5_5140 10.0kb downstream 10.0kb downstream 15603 true Chr05: 3342667-3358269 Physcomitrium patens
Pp3c5_5140 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3342667-3352666 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343547 5274 Embryophyte View MSA
123379754 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.501       High
cufflinks 1.64        
cufflinks 2.183        
cufflinks 1.497        
cufflinks 1.059       Low
cufflinks 2.026        
cufflinks 2.829       High
cufflinks 2.727       High
cufflinks 1.129       Low
cufflinks 1.875        
cufflinks 1.937        
cufflinks 1.796        
cufflinks 1.12       Low
cufflinks 1.682        
cufflinks 1.492        
cufflinks 1.894        
cufflinks 1.908        
cufflinks 1.65        
cufflinks 1.771        
cufflinks 2.09        
cufflinks 2.285       High
cufflinks 1.691        
cufflinks 1.705        
cufflinks 1.561        
cufflinks 2.033        
cufflinks 2.302       High
cufflinks 2.027        
cufflinks 1.637        
cufflinks 2.128        
cufflinks 1.107       Low

0 Strain