Gene : Pp3c5_3190 P. patens v3.3
Genomic Order:  156 Name:  ? Pp3c5_3190
Secondary Identifier:  ? PAC:32956048
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c5_3190 0.5kb upstream 0.5kb upstream 2914 true Chr05: 2089608-2092521 Physcomitrium patens
Pp3c5_3190 0.5kb upstream 0.5kb upstream 500 false Chr05: 2092022-2092521 Physcomitrium patens
Pp3c5_3190 0.5kb downstream 0.5kb downstream 2914 true Chr05: 2089108-2092021 Physcomitrium patens
Pp3c5_3190 0.5kb downstream 0.5kb downstream 500 false Chr05: 2089108-2089607 Physcomitrium patens
Pp3c5_3190 1.0kb upstream 1.0kb upstream 3414 true Chr05: 2089608-2093021 Physcomitrium patens
Pp3c5_3190 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2092022-2093021 Physcomitrium patens
Pp3c5_3190 1.0kb downstream 1.0kb downstream 3414 true Chr05: 2088608-2092021 Physcomitrium patens
Pp3c5_3190 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2088608-2089607 Physcomitrium patens
Pp3c5_3190 2.0kb upstream 2.0kb upstream 4414 true Chr05: 2089608-2094021 Physcomitrium patens
Pp3c5_3190 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2092022-2094021 Physcomitrium patens
Pp3c5_3190 2.0kb downstream 2.0kb downstream 4414 true Chr05: 2087608-2092021 Physcomitrium patens
Pp3c5_3190 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2087608-2089607 Physcomitrium patens
Pp3c5_3190 5.0kb upstream 5.0kb upstream 7414 true Chr05: 2089608-2097021 Physcomitrium patens
Pp3c5_3190 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2092022-2097021 Physcomitrium patens
Pp3c5_3190 5.0kb downstream 5.0kb downstream 7414 true Chr05: 2084608-2092021 Physcomitrium patens
Pp3c5_3190 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2084608-2089607 Physcomitrium patens
Pp3c5_3190 10.0kb upstream 10.0kb upstream 12414 true Chr05: 2089608-2102021 Physcomitrium patens
Pp3c5_3190 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2092022-2102021 Physcomitrium patens
Pp3c5_3190 10.0kb downstream 10.0kb downstream 12414 true Chr05: 2079608-2092021 Physcomitrium patens
Pp3c5_3190 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2079608-2089607 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121332415 5274 Embryophyte Singleton cluster - no MSA
123369327 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.195        
cufflinks 2.665       High
cufflinks 1.456        
cufflinks 0.382        
cufflinks 0.856        
cufflinks 1.754        
cufflinks 0.165        
cufflinks 0.242        
cufflinks 2.155       High
cufflinks 0.373        
cufflinks 0.294        
cufflinks 1.484        
cufflinks 1.314        
cufflinks 0.24        
cufflinks 1.902        
cufflinks 1.834        
cufflinks 1.092        
cufflinks 0.74        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.177        
cufflinks 0.976        
cufflinks 0.236        
cufflinks 0.989        
cufflinks 0.107       Low
cufflinks 4.047       High
cufflinks 0.113       Low
cufflinks 0.254        
cufflinks 2.498       High
cufflinks 0.668        
cufflinks 0.014     Low Low

0 Strain