Gene : Pp3c6_11160 P. patens v3.3
Genomic Order:  534 Name:  ? Pp3c6_11160
Secondary Identifier:  ? PAC:32976839
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_11160 0.5kb upstream 0.5kb upstream 3107   true Chr06: 7106644-7109750 Physcomitrium patens
Pp3c6_11160 0.5kb upstream 0.5kb upstream 500   false Chr06: 7106644-7107143 Physcomitrium patens
Pp3c6_11160 0.5kb downstream 0.5kb downstream 3107   true Chr06: 7107144-7110250 Physcomitrium patens
Pp3c6_11160 0.5kb downstream 0.5kb downstream 500   false Chr06: 7109751-7110250 Physcomitrium patens
Pp3c6_11160 1.0kb upstream 1.0kb upstream 3607   true Chr06: 7106144-7109750 Physcomitrium patens
Pp3c6_11160 1.0kb upstream 1.0kb upstream 1000   false Chr06: 7106144-7107143 Physcomitrium patens
Pp3c6_11160 1.0kb downstream 1.0kb downstream 3607   true Chr06: 7107144-7110750 Physcomitrium patens
Pp3c6_11160 1.0kb downstream 1.0kb downstream 1000   false Chr06: 7109751-7110750 Physcomitrium patens
Pp3c6_11160 2.0kb upstream 2.0kb upstream 4607   true Chr06: 7105144-7109750 Physcomitrium patens
Pp3c6_11160 2.0kb upstream 2.0kb upstream 2000   false Chr06: 7105144-7107143 Physcomitrium patens
Pp3c6_11160 2.0kb downstream 2.0kb downstream 4607   true Chr06: 7107144-7111750 Physcomitrium patens
Pp3c6_11160 2.0kb downstream 2.0kb downstream 2000   false Chr06: 7109751-7111750 Physcomitrium patens
Pp3c6_11160 5.0kb upstream 5.0kb upstream 7607   true Chr06: 7102144-7109750 Physcomitrium patens
Pp3c6_11160 5.0kb upstream 5.0kb upstream 5000   false Chr06: 7102144-7107143 Physcomitrium patens
Pp3c6_11160 5.0kb downstream 5.0kb downstream 7607   true Chr06: 7107144-7114750 Physcomitrium patens
Pp3c6_11160 5.0kb downstream 5.0kb downstream 5000   false Chr06: 7109751-7114750 Physcomitrium patens
Pp3c6_11160 10.0kb upstream 10.0kb upstream 12607   true Chr06: 7097144-7109750 Physcomitrium patens
Pp3c6_11160 10.0kb upstream 10.0kb upstream 10000   false Chr06: 7097144-7107143 Physcomitrium patens
Pp3c6_11160 10.0kb downstream 10.0kb downstream 12607   true Chr06: 7107144-7119750 Physcomitrium patens
Pp3c6_11160 10.0kb downstream 10.0kb downstream 10000   false Chr06: 7109751-7119750 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346624 5274 Embryophyte View MSA
123425591 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.615       High
cufflinks 3.651        
cufflinks 3.647        
cufflinks 3.325        
cufflinks 3.765        
cufflinks 4.066        
cufflinks 3.291        
cufflinks 3.651        
cufflinks 4.259        
cufflinks 3.932        
cufflinks 4.318        
cufflinks 2.547       Low
cufflinks 2.585        
cufflinks 4.001        
cufflinks 2.737        
cufflinks 4.376        
cufflinks 3.773        
cufflinks 3.536        
cufflinks 2.449       Low
cufflinks 3.57        
cufflinks 2.501       Low
cufflinks 4.974       High
cufflinks 1.58       Low
cufflinks 2.019       Low
cufflinks 4.265        
cufflinks 4.1        
cufflinks 3.147        
cufflinks 5.292       High
cufflinks 2.699        
cufflinks 3.592        

0 Strain