Gene : Pp3c5_6180 P. patens v3.3
Defline:  (1 of 94) PF13639 - Ring finger domain (zf-RING_2) Genomic Order:  298
Name:  ? Pp3c5_6180 Secondary Identifier:  ? PAC:32952688
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c5_6180 0.5kb upstream 0.5kb upstream 5182 true Chr05: 4308877-4314058 Physcomitrium patens
Pp3c5_6180 0.5kb upstream 0.5kb upstream 500 false Chr05: 4313559-4314058 Physcomitrium patens
Pp3c5_6180 0.5kb downstream 0.5kb downstream 5182 true Chr05: 4308377-4313558 Physcomitrium patens
Pp3c5_6180 0.5kb downstream 0.5kb downstream 500 false Chr05: 4308377-4308876 Physcomitrium patens
Pp3c5_6180 1.0kb upstream 1.0kb upstream 5682 true Chr05: 4308877-4314558 Physcomitrium patens
Pp3c5_6180 1.0kb upstream 1.0kb upstream 1000 false Chr05: 4313559-4314558 Physcomitrium patens
Pp3c5_6180 1.0kb downstream 1.0kb downstream 5682 true Chr05: 4307877-4313558 Physcomitrium patens
Pp3c5_6180 1.0kb downstream 1.0kb downstream 1000 false Chr05: 4307877-4308876 Physcomitrium patens
Pp3c5_6180 2.0kb upstream 2.0kb upstream 6682 true Chr05: 4308877-4315558 Physcomitrium patens
Pp3c5_6180 2.0kb upstream 2.0kb upstream 2000 false Chr05: 4313559-4315558 Physcomitrium patens
Pp3c5_6180 2.0kb downstream 2.0kb downstream 6682 true Chr05: 4306877-4313558 Physcomitrium patens
Pp3c5_6180 2.0kb downstream 2.0kb downstream 2000 false Chr05: 4306877-4308876 Physcomitrium patens
Pp3c5_6180 5.0kb upstream 5.0kb upstream 9682 true Chr05: 4308877-4318558 Physcomitrium patens
Pp3c5_6180 5.0kb upstream 5.0kb upstream 5000 false Chr05: 4313559-4318558 Physcomitrium patens
Pp3c5_6180 5.0kb downstream 5.0kb downstream 9682 true Chr05: 4303877-4313558 Physcomitrium patens
Pp3c5_6180 5.0kb downstream 5.0kb downstream 5000 false Chr05: 4303877-4308876 Physcomitrium patens
Pp3c5_6180 10.0kb upstream 10.0kb upstream 14682 true Chr05: 4308877-4323558 Physcomitrium patens
Pp3c5_6180 10.0kb upstream 10.0kb upstream 10000 false Chr05: 4313559-4323558 Physcomitrium patens
Pp3c5_6180 10.0kb downstream 10.0kb downstream 14682 true Chr05: 4298877-4313558 Physcomitrium patens
Pp3c5_6180 10.0kb downstream 10.0kb downstream 10000 false Chr05: 4298877-4308876 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121331998 5274 Embryophyte Singleton cluster - no MSA
123423203 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.017     Low  
cufflinks 0.027     Low  
cufflinks 0.06     Low  
cufflinks 0.012     Low Low
cufflinks 0.02     Low  
cufflinks 0.037     Low  
cufflinks 0.038     Low  
cufflinks 0.032     Low  
cufflinks 0.039     Low  
cufflinks 0.077     Low High
cufflinks 0.059     Low  
cufflinks 0.049     Low  
cufflinks 0.036     Low  
cufflinks 0.02     Low  
cufflinks 0.027     Low  
cufflinks 0.053     Low  
cufflinks 0.018     Low  
cufflinks 0.125       High
cufflinks 0.013     Low Low
cufflinks 0.023     Low  
cufflinks 0.009     Low Low
cufflinks 0.038     Low  
cufflinks 0.051     Low  
cufflinks 0.027     Low  
cufflinks 0.003     Low Low
cufflinks 0.054     Low  
cufflinks 0.037     Low  
cufflinks 0.005     Low Low
cufflinks 0.03     Low  
cufflinks 0.04     Low  

0 Strain