Gene : Pp3c6_16710 P. patens v3.3
Defline:  (1 of 6) PF00584 - SecE/Sec61-gamma subunits of protein translocation complex (SecE) Genomic Order:  780
Name:  ? Pp3c6_16710 Secondary Identifier:  ? PAC:32975893
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_16710 0.5kb upstream 0.5kb upstream 2645   true Chr06: 10774351-10776995 Physcomitrium patens
Pp3c6_16710 0.5kb upstream 0.5kb upstream 500   false Chr06: 10774351-10774850 Physcomitrium patens
Pp3c6_16710 0.5kb downstream 0.5kb downstream 2645   true Chr06: 10774851-10777495 Physcomitrium patens
Pp3c6_16710 0.5kb downstream 0.5kb downstream 500   false Chr06: 10776996-10777495 Physcomitrium patens
Pp3c6_16710 1.0kb upstream 1.0kb upstream 3145   true Chr06: 10773851-10776995 Physcomitrium patens
Pp3c6_16710 1.0kb upstream 1.0kb upstream 1000   false Chr06: 10773851-10774850 Physcomitrium patens
Pp3c6_16710 1.0kb downstream 1.0kb downstream 3145   true Chr06: 10774851-10777995 Physcomitrium patens
Pp3c6_16710 1.0kb downstream 1.0kb downstream 1000   false Chr06: 10776996-10777995 Physcomitrium patens
Pp3c6_16710 2.0kb upstream 2.0kb upstream 4145   true Chr06: 10772851-10776995 Physcomitrium patens
Pp3c6_16710 2.0kb upstream 2.0kb upstream 2000   false Chr06: 10772851-10774850 Physcomitrium patens
Pp3c6_16710 2.0kb downstream 2.0kb downstream 4145   true Chr06: 10774851-10778995 Physcomitrium patens
Pp3c6_16710 2.0kb downstream 2.0kb downstream 2000   false Chr06: 10776996-10778995 Physcomitrium patens
Pp3c6_16710 5.0kb upstream 5.0kb upstream 7145   true Chr06: 10769851-10776995 Physcomitrium patens
Pp3c6_16710 5.0kb upstream 5.0kb upstream 5000   false Chr06: 10769851-10774850 Physcomitrium patens
Pp3c6_16710 5.0kb downstream 5.0kb downstream 7145   true Chr06: 10774851-10781995 Physcomitrium patens
Pp3c6_16710 5.0kb downstream 5.0kb downstream 5000   false Chr06: 10776996-10781995 Physcomitrium patens
Pp3c6_16710 10.0kb upstream 10.0kb upstream 12145   true Chr06: 10764851-10776995 Physcomitrium patens
Pp3c6_16710 10.0kb upstream 10.0kb upstream 10000   false Chr06: 10764851-10774850 Physcomitrium patens
Pp3c6_16710 10.0kb downstream 10.0kb downstream 12145   true Chr06: 10774851-10786995 Physcomitrium patens
Pp3c6_16710 10.0kb downstream 10.0kb downstream 10000   false Chr06: 10776996-10786995 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351446 5274 Embryophyte View MSA
123382170 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.346        
cufflinks 4.498       High
cufflinks 2.887        
cufflinks 1.422       Low
cufflinks 1.787       Low
cufflinks 2.884        
cufflinks 3.589        
cufflinks 2.626        
cufflinks 3.421        
cufflinks 2.393        
cufflinks 3.045        
cufflinks 2.582        
cufflinks 3.058        
cufflinks 2.986        
cufflinks 2.909        
cufflinks 2.165       Low
cufflinks 3.432        
cufflinks 4.628       High
cufflinks 4.23       High
cufflinks 3.099        
cufflinks 2.879        
cufflinks 2.969        
cufflinks 4.624       High
cufflinks 1.696       Low
cufflinks 2.607        
cufflinks 2.991        
cufflinks 3.838        
cufflinks 2.449        
cufflinks 2.084       Low
cufflinks 3.495        

0 Strain