Gene : Pp3c6_24290 P. patens v3.3
Defline:  (1 of 3) PTHR22604:SF111 - NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN Genomic Order:  1155
Name:  ? Pp3c6_24290 Secondary Identifier:  ? PAC:32977873
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_24290 0.5kb upstream 0.5kb upstream 6089   true Chr06: 15963550-15969638 Physcomitrium patens
Pp3c6_24290 0.5kb upstream 0.5kb upstream 500   false Chr06: 15963550-15964049 Physcomitrium patens
Pp3c6_24290 0.5kb downstream 0.5kb downstream 6089   true Chr06: 15964050-15970138 Physcomitrium patens
Pp3c6_24290 0.5kb downstream 0.5kb downstream 500   false Chr06: 15969639-15970138 Physcomitrium patens
Pp3c6_24290 1.0kb upstream 1.0kb upstream 6589   true Chr06: 15963050-15969638 Physcomitrium patens
Pp3c6_24290 1.0kb upstream 1.0kb upstream 1000   false Chr06: 15963050-15964049 Physcomitrium patens
Pp3c6_24290 1.0kb downstream 1.0kb downstream 6589   true Chr06: 15964050-15970638 Physcomitrium patens
Pp3c6_24290 1.0kb downstream 1.0kb downstream 1000   false Chr06: 15969639-15970638 Physcomitrium patens
Pp3c6_24290 2.0kb upstream 2.0kb upstream 7589   true Chr06: 15962050-15969638 Physcomitrium patens
Pp3c6_24290 2.0kb upstream 2.0kb upstream 2000   false Chr06: 15962050-15964049 Physcomitrium patens
Pp3c6_24290 2.0kb downstream 2.0kb downstream 7589   true Chr06: 15964050-15971638 Physcomitrium patens
Pp3c6_24290 2.0kb downstream 2.0kb downstream 2000   false Chr06: 15969639-15971638 Physcomitrium patens
Pp3c6_24290 5.0kb upstream 5.0kb upstream 10589   true Chr06: 15959050-15969638 Physcomitrium patens
Pp3c6_24290 5.0kb upstream 5.0kb upstream 5000   false Chr06: 15959050-15964049 Physcomitrium patens
Pp3c6_24290 5.0kb downstream 5.0kb downstream 10589   true Chr06: 15964050-15974638 Physcomitrium patens
Pp3c6_24290 5.0kb downstream 5.0kb downstream 5000   false Chr06: 15969639-15974638 Physcomitrium patens
Pp3c6_24290 10.0kb upstream 10.0kb upstream 15589   true Chr06: 15954050-15969638 Physcomitrium patens
Pp3c6_24290 10.0kb upstream 10.0kb upstream 10000   false Chr06: 15954050-15964049 Physcomitrium patens
Pp3c6_24290 10.0kb downstream 10.0kb downstream 15589   true Chr06: 15964050-15979638 Physcomitrium patens
Pp3c6_24290 10.0kb downstream 10.0kb downstream 10000   false Chr06: 15969639-15979638 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346976 5274 Embryophyte View MSA
123425527 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.773        
cufflinks 1.774        
cufflinks 2.839        
cufflinks 1.707        
cufflinks 2.201        
cufflinks 1.521        
cufflinks 1.96        
cufflinks 1.112        
cufflinks 2.789        
cufflinks 1.018       Low
cufflinks 3.178        
cufflinks 2.694        
cufflinks 1.806        
cufflinks 2.914        
cufflinks 2.53        
cufflinks 1.739        
cufflinks 0.518       Low
cufflinks 3.243        
cufflinks 2.969        
cufflinks 0.3       Low
cufflinks 2.891        
cufflinks 0.477       Low
cufflinks 3.243        
cufflinks 2.328        
cufflinks 2.464        
cufflinks 1.205        
cufflinks 2.033        
cufflinks 1.893        
cufflinks 2.96        
cufflinks 2.438        

0 Strain