Gene : Pp3c6_24540 P. patens v3.3
Defline:  (1 of 2) PTHR12931 - UBIQUITIN THIOLESTERASE PROTEIN OTUB Genomic Order:  1166
Name:  ? Pp3c6_24540 Secondary Identifier:  ? PAC:32978159
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_24540 0.5kb upstream 0.5kb upstream 5535   true Chr06: 16133545-16139079 Physcomitrium patens
Pp3c6_24540 0.5kb upstream 0.5kb upstream 500   false Chr06: 16133545-16134044 Physcomitrium patens
Pp3c6_24540 0.5kb downstream 0.5kb downstream 5535   true Chr06: 16134045-16139579 Physcomitrium patens
Pp3c6_24540 0.5kb downstream 0.5kb downstream 500   false Chr06: 16139080-16139579 Physcomitrium patens
Pp3c6_24540 1.0kb upstream 1.0kb upstream 6035   true Chr06: 16133045-16139079 Physcomitrium patens
Pp3c6_24540 1.0kb upstream 1.0kb upstream 1000   false Chr06: 16133045-16134044 Physcomitrium patens
Pp3c6_24540 1.0kb downstream 1.0kb downstream 6035   true Chr06: 16134045-16140079 Physcomitrium patens
Pp3c6_24540 1.0kb downstream 1.0kb downstream 1000   false Chr06: 16139080-16140079 Physcomitrium patens
Pp3c6_24540 2.0kb upstream 2.0kb upstream 7035   true Chr06: 16132045-16139079 Physcomitrium patens
Pp3c6_24540 2.0kb upstream 2.0kb upstream 2000   false Chr06: 16132045-16134044 Physcomitrium patens
Pp3c6_24540 2.0kb downstream 2.0kb downstream 7035   true Chr06: 16134045-16141079 Physcomitrium patens
Pp3c6_24540 2.0kb downstream 2.0kb downstream 2000   false Chr06: 16139080-16141079 Physcomitrium patens
Pp3c6_24540 5.0kb upstream 5.0kb upstream 10035   true Chr06: 16129045-16139079 Physcomitrium patens
Pp3c6_24540 5.0kb upstream 5.0kb upstream 5000   false Chr06: 16129045-16134044 Physcomitrium patens
Pp3c6_24540 5.0kb downstream 5.0kb downstream 10035   true Chr06: 16134045-16144079 Physcomitrium patens
Pp3c6_24540 5.0kb downstream 5.0kb downstream 5000   false Chr06: 16139080-16144079 Physcomitrium patens
Pp3c6_24540 10.0kb upstream 10.0kb upstream 15035   true Chr06: 16124045-16139079 Physcomitrium patens
Pp3c6_24540 10.0kb upstream 10.0kb upstream 10000   false Chr06: 16124045-16134044 Physcomitrium patens
Pp3c6_24540 10.0kb downstream 10.0kb downstream 15035   true Chr06: 16134045-16149079 Physcomitrium patens
Pp3c6_24540 10.0kb downstream 10.0kb downstream 10000   false Chr06: 16139080-16149079 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344850 5274 Embryophyte View MSA
123424451 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.873        
cufflinks 1.014        
cufflinks 1.607       High
cufflinks 0.472       Low
cufflinks 0.315       Low
cufflinks 1.336        
cufflinks 0.984        
cufflinks 1.042        
cufflinks 0.682        
cufflinks 0.732        
cufflinks 0.963        
cufflinks 1.014        
cufflinks 1.729       High
cufflinks 0.766        
cufflinks 0.903        
cufflinks 1.173        
cufflinks 1.323        
cufflinks 0.958        
cufflinks 0.852        
cufflinks 1.121        
cufflinks 1.109        
cufflinks 0.699        
cufflinks 1.172        
cufflinks 1.075        
cufflinks 0.242       Low
cufflinks 0.941        
cufflinks 1.191        
cufflinks 0.351       Low
cufflinks 0.822        
cufflinks 1.229        

0 Strain