Gene : Pp3c6_21090 P. patens v3.3
Genomic Order:  1016 Name:  ? Pp3c6_21090
Secondary Identifier:  ? PAC:32976097
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_21090 0.5kb upstream 0.5kb upstream 10072   true Chr06: 13331385-13341456 Physcomitrium patens
Pp3c6_21090 0.5kb upstream 0.5kb upstream 500   false Chr06: 13340957-13341456 Physcomitrium patens
Pp3c6_21090 0.5kb downstream 0.5kb downstream 10072   true Chr06: 13330885-13340956 Physcomitrium patens
Pp3c6_21090 0.5kb downstream 0.5kb downstream 500   false Chr06: 13330885-13331384 Physcomitrium patens
Pp3c6_21090 1.0kb upstream 1.0kb upstream 10572   true Chr06: 13331385-13341956 Physcomitrium patens
Pp3c6_21090 1.0kb upstream 1.0kb upstream 1000   false Chr06: 13340957-13341956 Physcomitrium patens
Pp3c6_21090 1.0kb downstream 1.0kb downstream 10572   true Chr06: 13330385-13340956 Physcomitrium patens
Pp3c6_21090 1.0kb downstream 1.0kb downstream 1000   false Chr06: 13330385-13331384 Physcomitrium patens
Pp3c6_21090 2.0kb upstream 2.0kb upstream 11572   true Chr06: 13331385-13342956 Physcomitrium patens
Pp3c6_21090 2.0kb upstream 2.0kb upstream 2000   false Chr06: 13340957-13342956 Physcomitrium patens
Pp3c6_21090 2.0kb downstream 2.0kb downstream 11572   true Chr06: 13329385-13340956 Physcomitrium patens
Pp3c6_21090 2.0kb downstream 2.0kb downstream 2000   false Chr06: 13329385-13331384 Physcomitrium patens
Pp3c6_21090 5.0kb upstream 5.0kb upstream 14572   true Chr06: 13331385-13345956 Physcomitrium patens
Pp3c6_21090 5.0kb upstream 5.0kb upstream 5000   false Chr06: 13340957-13345956 Physcomitrium patens
Pp3c6_21090 5.0kb downstream 5.0kb downstream 14572   true Chr06: 13326385-13340956 Physcomitrium patens
Pp3c6_21090 5.0kb downstream 5.0kb downstream 5000   false Chr06: 13326385-13331384 Physcomitrium patens
Pp3c6_21090 10.0kb upstream 10.0kb upstream 19572   true Chr06: 13331385-13350956 Physcomitrium patens
Pp3c6_21090 10.0kb upstream 10.0kb upstream 10000   false Chr06: 13340957-13350956 Physcomitrium patens
Pp3c6_21090 10.0kb downstream 10.0kb downstream 19572   true Chr06: 13321385-13340956 Physcomitrium patens
Pp3c6_21090 10.0kb downstream 10.0kb downstream 10000   false Chr06: 13321385-13331384 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342379 5274 Embryophyte View MSA
123378957 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.272        
cufflinks 0.237        
cufflinks 0.326        
cufflinks 0.056     Low Low
cufflinks 0.239        
cufflinks 0.204        
cufflinks 0.011     Low Low
cufflinks 0.27        
cufflinks 0.132        
cufflinks 0.193        
cufflinks 0.258        
cufflinks 0.196        
cufflinks 0.298        
cufflinks 0.336        
cufflinks 0.067       Low
cufflinks 0.486       High
cufflinks 0.422        
cufflinks 0.235        
cufflinks 0.019     Low Low
cufflinks 0.33        
cufflinks 0.307        
cufflinks 0.105        
cufflinks 0.138        
cufflinks 1.21       High
cufflinks 0.262        
cufflinks 0.152        
cufflinks 0.345        
cufflinks 0.074     Low  
cufflinks 0.11        
cufflinks 0.137        

0 Strain