Gene : Pp3c6_29670 P. patens v3.3
Defline:  (1 of 20) 3.6.3.8 - Calcium-transporting ATPase / Calcium-translocating P-type ATPase Genomic Order:  1397
Name:  ? Pp3c6_29670 Secondary Identifier:  ? PAC:32975876
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_29670 0.5kb upstream 0.5kb upstream 2144   true Chr06: 19354336-19356479 Physcomitrium patens
Pp3c6_29670 0.5kb upstream 0.5kb upstream 500   false Chr06: 19355980-19356479 Physcomitrium patens
Pp3c6_29670 0.5kb downstream 0.5kb downstream 2144   true Chr06: 19353836-19355979 Physcomitrium patens
Pp3c6_29670 0.5kb downstream 0.5kb downstream 500   false Chr06: 19353836-19354335 Physcomitrium patens
Pp3c6_29670 1.0kb upstream 1.0kb upstream 2644   true Chr06: 19354336-19356979 Physcomitrium patens
Pp3c6_29670 1.0kb upstream 1.0kb upstream 1000   false Chr06: 19355980-19356979 Physcomitrium patens
Pp3c6_29670 1.0kb downstream 1.0kb downstream 2644   true Chr06: 19353336-19355979 Physcomitrium patens
Pp3c6_29670 1.0kb downstream 1.0kb downstream 1000   false Chr06: 19353336-19354335 Physcomitrium patens
Pp3c6_29670 2.0kb upstream 2.0kb upstream 3644   true Chr06: 19354336-19357979 Physcomitrium patens
Pp3c6_29670 2.0kb upstream 2.0kb upstream 2000   false Chr06: 19355980-19357979 Physcomitrium patens
Pp3c6_29670 2.0kb downstream 2.0kb downstream 3644   true Chr06: 19352336-19355979 Physcomitrium patens
Pp3c6_29670 2.0kb downstream 2.0kb downstream 2000   false Chr06: 19352336-19354335 Physcomitrium patens
Pp3c6_29670 5.0kb upstream 5.0kb upstream 6644   true Chr06: 19354336-19360979 Physcomitrium patens
Pp3c6_29670 5.0kb upstream 5.0kb upstream 5000   false Chr06: 19355980-19360979 Physcomitrium patens
Pp3c6_29670 5.0kb downstream 5.0kb downstream 6644   true Chr06: 19349336-19355979 Physcomitrium patens
Pp3c6_29670 5.0kb downstream 5.0kb downstream 5000   false Chr06: 19349336-19354335 Physcomitrium patens
Pp3c6_29670 10.0kb upstream 10.0kb upstream 11644   true Chr06: 19354336-19365979 Physcomitrium patens
Pp3c6_29670 10.0kb upstream 10.0kb upstream 10000   false Chr06: 19355980-19365979 Physcomitrium patens
Pp3c6_29670 10.0kb downstream 10.0kb downstream 11644   true Chr06: 19344336-19355979 Physcomitrium patens
Pp3c6_29670 10.0kb downstream 10.0kb downstream 10000   false Chr06: 19344336-19354335 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121334854 5274 Embryophyte Singleton cluster - no MSA
123371722 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.046     Low  
cufflinks 0.003     Low Low
cufflinks 0.195        
cufflinks 0.049     Low  
cufflinks 0.202        
cufflinks 0.021     Low Low
cufflinks 0.198        
cufflinks 0.024     Low  
cufflinks 0.547       High
cufflinks 0.121        
cufflinks 0.056     Low  
cufflinks 0.108        
cufflinks 0.129        
cufflinks 0.036     Low  
cufflinks 0.364       High
cufflinks 0.066     Low  
cufflinks 0.029     Low  
cufflinks 0.085        
cufflinks 0.044     Low  
cufflinks 0.031     Low  
cufflinks 0.065     Low  
cufflinks 0.18        
cufflinks 0.052     Low  
cufflinks 0.012     Low Low
cufflinks 0.109        
cufflinks 0.394       High
cufflinks 0.016     Low Low
cufflinks 0.078     Low  
cufflinks 0.505       High
cufflinks 0.052     Low  

0 Strain