Gene : Pp3c6_3350 P. patens v3.3
Defline:  (1 of 40) PTHR11439//PTHR11439:SF127 - GAG-POL-RELATED RETROTRANSPOSON Genomic Order:  150
Name:  ? Pp3c6_3350 Secondary Identifier:  ? PAC:32976208
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_3350 0.5kb upstream 0.5kb upstream 1863   true Chr06: 1934762-1936624 Physcomitrium patens
Pp3c6_3350 0.5kb upstream 0.5kb upstream 500   false Chr06: 1936125-1936624 Physcomitrium patens
Pp3c6_3350 0.5kb downstream 0.5kb downstream 1863   true Chr06: 1934262-1936124 Physcomitrium patens
Pp3c6_3350 0.5kb downstream 0.5kb downstream 500   false Chr06: 1934262-1934761 Physcomitrium patens
Pp3c6_3350 1.0kb upstream 1.0kb upstream 2363   true Chr06: 1934762-1937124 Physcomitrium patens
Pp3c6_3350 1.0kb upstream 1.0kb upstream 1000   false Chr06: 1936125-1937124 Physcomitrium patens
Pp3c6_3350 1.0kb downstream 1.0kb downstream 2363   true Chr06: 1933762-1936124 Physcomitrium patens
Pp3c6_3350 1.0kb downstream 1.0kb downstream 1000   false Chr06: 1933762-1934761 Physcomitrium patens
Pp3c6_3350 2.0kb upstream 2.0kb upstream 3363   true Chr06: 1934762-1938124 Physcomitrium patens
Pp3c6_3350 2.0kb upstream 2.0kb upstream 2000   false Chr06: 1936125-1938124 Physcomitrium patens
Pp3c6_3350 2.0kb downstream 2.0kb downstream 3363   true Chr06: 1932762-1936124 Physcomitrium patens
Pp3c6_3350 2.0kb downstream 2.0kb downstream 2000   false Chr06: 1932762-1934761 Physcomitrium patens
Pp3c6_3350 5.0kb upstream 5.0kb upstream 6363   true Chr06: 1934762-1941124 Physcomitrium patens
Pp3c6_3350 5.0kb upstream 5.0kb upstream 5000   false Chr06: 1936125-1941124 Physcomitrium patens
Pp3c6_3350 5.0kb downstream 5.0kb downstream 6363   true Chr06: 1929762-1936124 Physcomitrium patens
Pp3c6_3350 5.0kb downstream 5.0kb downstream 5000   false Chr06: 1929762-1934761 Physcomitrium patens
Pp3c6_3350 10.0kb upstream 10.0kb upstream 11363   true Chr06: 1934762-1946124 Physcomitrium patens
Pp3c6_3350 10.0kb upstream 10.0kb upstream 10000   false Chr06: 1936125-1946124 Physcomitrium patens
Pp3c6_3350 10.0kb downstream 10.0kb downstream 11363   true Chr06: 1924762-1936124 Physcomitrium patens
Pp3c6_3350 10.0kb downstream 10.0kb downstream 10000   false Chr06: 1924762-1934761 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336934 5274 Embryophyte View MSA
123373736 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.055     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.061     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain