Gene : Pp3c6_4070 P. patens v3.3
Defline:  (1 of 40) PTHR11439//PTHR11439:SF127 - GAG-POL-RELATED RETROTRANSPOSON Genomic Order:  193
Name:  ? Pp3c6_4070 Secondary Identifier:  ? PAC:32975847
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_4070 0.5kb upstream 0.5kb upstream 2897   true Chr06: 2347395-2350291 Physcomitrium patens
Pp3c6_4070 0.5kb upstream 0.5kb upstream 500   false Chr06: 2349792-2350291 Physcomitrium patens
Pp3c6_4070 0.5kb downstream 0.5kb downstream 2897   true Chr06: 2346895-2349791 Physcomitrium patens
Pp3c6_4070 0.5kb downstream 0.5kb downstream 500   false Chr06: 2346895-2347394 Physcomitrium patens
Pp3c6_4070 1.0kb upstream 1.0kb upstream 3397   true Chr06: 2347395-2350791 Physcomitrium patens
Pp3c6_4070 1.0kb upstream 1.0kb upstream 1000   false Chr06: 2349792-2350791 Physcomitrium patens
Pp3c6_4070 1.0kb downstream 1.0kb downstream 3397   true Chr06: 2346395-2349791 Physcomitrium patens
Pp3c6_4070 1.0kb downstream 1.0kb downstream 1000   false Chr06: 2346395-2347394 Physcomitrium patens
Pp3c6_4070 2.0kb upstream 2.0kb upstream 4397   true Chr06: 2347395-2351791 Physcomitrium patens
Pp3c6_4070 2.0kb upstream 2.0kb upstream 2000   false Chr06: 2349792-2351791 Physcomitrium patens
Pp3c6_4070 2.0kb downstream 2.0kb downstream 4397   true Chr06: 2345395-2349791 Physcomitrium patens
Pp3c6_4070 2.0kb downstream 2.0kb downstream 2000   false Chr06: 2345395-2347394 Physcomitrium patens
Pp3c6_4070 5.0kb upstream 5.0kb upstream 7397   true Chr06: 2347395-2354791 Physcomitrium patens
Pp3c6_4070 5.0kb upstream 5.0kb upstream 5000   false Chr06: 2349792-2354791 Physcomitrium patens
Pp3c6_4070 5.0kb downstream 5.0kb downstream 7397   true Chr06: 2342395-2349791 Physcomitrium patens
Pp3c6_4070 5.0kb downstream 5.0kb downstream 5000   false Chr06: 2342395-2347394 Physcomitrium patens
Pp3c6_4070 10.0kb upstream 10.0kb upstream 12397   true Chr06: 2347395-2359791 Physcomitrium patens
Pp3c6_4070 10.0kb upstream 10.0kb upstream 10000   false Chr06: 2349792-2359791 Physcomitrium patens
Pp3c6_4070 10.0kb downstream 10.0kb downstream 12397   true Chr06: 2337395-2349791 Physcomitrium patens
Pp3c6_4070 10.0kb downstream 10.0kb downstream 10000   false Chr06: 2337395-2347394 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351283 5274 Embryophyte View MSA
123382097 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain