Gene : Pp3c6_25280 P. patens v3.3
Defline:  (1 of 1) PTHR23077:SF27 - SPERMATOGENESIS-ASSOCIATED PROTEIN 5 Genomic Order:  1203
Name:  ? Pp3c6_25280 Secondary Identifier:  ? PAC:32975524
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_25280 0.5kb upstream 0.5kb upstream 7264   true Chr06: 16621383-16628646 Physcomitrium patens
Pp3c6_25280 0.5kb upstream 0.5kb upstream 500   false Chr06: 16628147-16628646 Physcomitrium patens
Pp3c6_25280 0.5kb downstream 0.5kb downstream 7264   true Chr06: 16620883-16628146 Physcomitrium patens
Pp3c6_25280 0.5kb downstream 0.5kb downstream 500   false Chr06: 16620883-16621382 Physcomitrium patens
Pp3c6_25280 1.0kb upstream 1.0kb upstream 7764   true Chr06: 16621383-16629146 Physcomitrium patens
Pp3c6_25280 1.0kb upstream 1.0kb upstream 1000   false Chr06: 16628147-16629146 Physcomitrium patens
Pp3c6_25280 1.0kb downstream 1.0kb downstream 7764   true Chr06: 16620383-16628146 Physcomitrium patens
Pp3c6_25280 1.0kb downstream 1.0kb downstream 1000   false Chr06: 16620383-16621382 Physcomitrium patens
Pp3c6_25280 2.0kb upstream 2.0kb upstream 8764   true Chr06: 16621383-16630146 Physcomitrium patens
Pp3c6_25280 2.0kb upstream 2.0kb upstream 2000   false Chr06: 16628147-16630146 Physcomitrium patens
Pp3c6_25280 2.0kb downstream 2.0kb downstream 8764   true Chr06: 16619383-16628146 Physcomitrium patens
Pp3c6_25280 2.0kb downstream 2.0kb downstream 2000   false Chr06: 16619383-16621382 Physcomitrium patens
Pp3c6_25280 5.0kb upstream 5.0kb upstream 11764   true Chr06: 16621383-16633146 Physcomitrium patens
Pp3c6_25280 5.0kb upstream 5.0kb upstream 5000   false Chr06: 16628147-16633146 Physcomitrium patens
Pp3c6_25280 5.0kb downstream 5.0kb downstream 11764   true Chr06: 16616383-16628146 Physcomitrium patens
Pp3c6_25280 5.0kb downstream 5.0kb downstream 5000   false Chr06: 16616383-16621382 Physcomitrium patens
Pp3c6_25280 10.0kb upstream 10.0kb upstream 16764   true Chr06: 16621383-16638146 Physcomitrium patens
Pp3c6_25280 10.0kb upstream 10.0kb upstream 10000   false Chr06: 16628147-16638146 Physcomitrium patens
Pp3c6_25280 10.0kb downstream 10.0kb downstream 16764   true Chr06: 16611383-16628146 Physcomitrium patens
Pp3c6_25280 10.0kb downstream 10.0kb downstream 10000   false Chr06: 16611383-16621382 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345411 5274 Embryophyte View MSA
123426108 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.815        
cufflinks 1.359       High
cufflinks 0.727        
cufflinks 0.608        
cufflinks 0.599        
cufflinks 0.971        
cufflinks 0.78        
cufflinks 1.351       High
cufflinks 1.072        
cufflinks 0.502       Low
cufflinks 0.802        
cufflinks 0.807        
cufflinks 0.693        
cufflinks 0.356       Low
cufflinks 0.479       Low
cufflinks 0.916        
cufflinks 0.745        
cufflinks 1.347       High
cufflinks 0.482       Low
cufflinks 1.006        
cufflinks 1.186       High
cufflinks 1.219       High
cufflinks 0.63        
cufflinks 0.986        
cufflinks 0.823        
cufflinks 0.729        
cufflinks 0.74        
cufflinks 0.775        
cufflinks 0.664        
cufflinks 0.83        

0 Strain