Gene : Pp3c6_8890 P. patens v3.3
Defline:  (1 of 3) PTHR30546:SF3 - MINOR ALLERGEN Genomic Order:  421
Name:  ? Pp3c6_8890 Secondary Identifier:  ? PAC:32977949
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-7279 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_8890 0.5kb upstream 0.5kb upstream 1541   true Chr06: 5589018-5590558 Physcomitrium patens
Pp3c6_8890 0.5kb upstream 0.5kb upstream 500   false Chr06: 5590059-5590558 Physcomitrium patens
Pp3c6_8890 0.5kb downstream 0.5kb downstream 1541   true Chr06: 5588518-5590058 Physcomitrium patens
Pp3c6_8890 0.5kb downstream 0.5kb downstream 500   false Chr06: 5588518-5589017 Physcomitrium patens
Pp3c6_8890 1.0kb upstream 1.0kb upstream 2041   true Chr06: 5589018-5591058 Physcomitrium patens
Pp3c6_8890 1.0kb upstream 1.0kb upstream 1000   false Chr06: 5590059-5591058 Physcomitrium patens
Pp3c6_8890 1.0kb downstream 1.0kb downstream 2041   true Chr06: 5588018-5590058 Physcomitrium patens
Pp3c6_8890 1.0kb downstream 1.0kb downstream 1000   false Chr06: 5588018-5589017 Physcomitrium patens
Pp3c6_8890 2.0kb upstream 2.0kb upstream 3041   true Chr06: 5589018-5592058 Physcomitrium patens
Pp3c6_8890 2.0kb upstream 2.0kb upstream 2000   false Chr06: 5590059-5592058 Physcomitrium patens
Pp3c6_8890 2.0kb downstream 2.0kb downstream 3041   true Chr06: 5587018-5590058 Physcomitrium patens
Pp3c6_8890 2.0kb downstream 2.0kb downstream 2000   false Chr06: 5587018-5589017 Physcomitrium patens
Pp3c6_8890 5.0kb upstream 5.0kb upstream 6041   true Chr06: 5589018-5595058 Physcomitrium patens
Pp3c6_8890 5.0kb upstream 5.0kb upstream 5000   false Chr06: 5590059-5595058 Physcomitrium patens
Pp3c6_8890 5.0kb downstream 5.0kb downstream 6041   true Chr06: 5584018-5590058 Physcomitrium patens
Pp3c6_8890 5.0kb downstream 5.0kb downstream 5000   false Chr06: 5584018-5589017 Physcomitrium patens
Pp3c6_8890 10.0kb upstream 10.0kb upstream 11041   true Chr06: 5589018-5600058 Physcomitrium patens
Pp3c6_8890 10.0kb upstream 10.0kb upstream 10000   false Chr06: 5590059-5600058 Physcomitrium patens
Pp3c6_8890 10.0kb downstream 10.0kb downstream 11041   true Chr06: 5579018-5590058 Physcomitrium patens
Pp3c6_8890 10.0kb downstream 10.0kb downstream 10000   false Chr06: 5579018-5589017 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121352058 5274 Embryophyte View MSA
123428089 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain