Gene : Pp3c7_14690 P. patens v3.3
Defline:  (1 of 2) PTHR15117 - ATAXIN 7 RELATED Genomic Order:  750
Name:  ? Pp3c7_14690 Secondary Identifier:  ? PAC:32924386
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c7_14690 0.5kb upstream 0.5kb upstream 4346 true Chr07: 9919050-9923395 Physcomitrium patens
Pp3c7_14690 0.5kb upstream 0.5kb upstream 500 false Chr07: 9922896-9923395 Physcomitrium patens
Pp3c7_14690 0.5kb downstream 0.5kb downstream 4346 true Chr07: 9918550-9922895 Physcomitrium patens
Pp3c7_14690 0.5kb downstream 0.5kb downstream 500 false Chr07: 9918550-9919049 Physcomitrium patens
Pp3c7_14690 1.0kb upstream 1.0kb upstream 4846 true Chr07: 9919050-9923895 Physcomitrium patens
Pp3c7_14690 1.0kb upstream 1.0kb upstream 1000 false Chr07: 9922896-9923895 Physcomitrium patens
Pp3c7_14690 1.0kb downstream 1.0kb downstream 4846 true Chr07: 9918050-9922895 Physcomitrium patens
Pp3c7_14690 1.0kb downstream 1.0kb downstream 1000 false Chr07: 9918050-9919049 Physcomitrium patens
Pp3c7_14690 2.0kb upstream 2.0kb upstream 5846 true Chr07: 9919050-9924895 Physcomitrium patens
Pp3c7_14690 2.0kb upstream 2.0kb upstream 2000 false Chr07: 9922896-9924895 Physcomitrium patens
Pp3c7_14690 2.0kb downstream 2.0kb downstream 5846 true Chr07: 9917050-9922895 Physcomitrium patens
Pp3c7_14690 2.0kb downstream 2.0kb downstream 2000 false Chr07: 9917050-9919049 Physcomitrium patens
Pp3c7_14690 5.0kb upstream 5.0kb upstream 8846 true Chr07: 9919050-9927895 Physcomitrium patens
Pp3c7_14690 5.0kb upstream 5.0kb upstream 5000 false Chr07: 9922896-9927895 Physcomitrium patens
Pp3c7_14690 5.0kb downstream 5.0kb downstream 8846 true Chr07: 9914050-9922895 Physcomitrium patens
Pp3c7_14690 5.0kb downstream 5.0kb downstream 5000 false Chr07: 9914050-9919049 Physcomitrium patens
Pp3c7_14690 10.0kb upstream 10.0kb upstream 13846 true Chr07: 9919050-9932895 Physcomitrium patens
Pp3c7_14690 10.0kb upstream 10.0kb upstream 10000 false Chr07: 9922896-9932895 Physcomitrium patens
Pp3c7_14690 10.0kb downstream 10.0kb downstream 13846 true Chr07: 9909050-9922895 Physcomitrium patens
Pp3c7_14690 10.0kb downstream 10.0kb downstream 10000 false Chr07: 9909050-9919049 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343910 5274 Embryophyte View MSA
123425700 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.546       Low
cufflinks 0.523       Low
cufflinks 0.826        
cufflinks 0.701        
cufflinks 0.605        
cufflinks 0.636        
cufflinks 0.623        
cufflinks 0.727        
cufflinks 0.983       High
cufflinks 0.636        
cufflinks 0.661        
cufflinks 0.373       Low
cufflinks 0.722        
cufflinks 0.676        
cufflinks 0.724        
cufflinks 0.659        
cufflinks 0.668        
cufflinks 0.694        
cufflinks 0.711        
cufflinks 1.056       High
cufflinks 0.786        
cufflinks 0.534       Low
cufflinks 0.639        
cufflinks 1.135       High
cufflinks 0.921       High
cufflinks 0.659        
cufflinks 0.533       Low
cufflinks 0.83        
cufflinks 0.551       Low
cufflinks 0.95       High

0 Strain