Gene : Pp3c7_11540 P. patens v3.3
Defline:  (1 of 12) PTHR33294:SF6 - AWPM-19-LIKE FAMILY PROTEIN-RELATED Genomic Order:  630
Name:  ? Pp3c7_11540 Secondary Identifier:  ? PAC:32923195
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c7_11540 0.5kb upstream 0.5kb upstream 2851 true Chr07: 7668835-7671685 Physcomitrium patens
Pp3c7_11540 0.5kb upstream 0.5kb upstream 500 false Chr07: 7671186-7671685 Physcomitrium patens
Pp3c7_11540 0.5kb downstream 0.5kb downstream 2851 true Chr07: 7668335-7671185 Physcomitrium patens
Pp3c7_11540 0.5kb downstream 0.5kb downstream 500 false Chr07: 7668335-7668834 Physcomitrium patens
Pp3c7_11540 1.0kb upstream 1.0kb upstream 3351 true Chr07: 7668835-7672185 Physcomitrium patens
Pp3c7_11540 1.0kb upstream 1.0kb upstream 1000 false Chr07: 7671186-7672185 Physcomitrium patens
Pp3c7_11540 1.0kb downstream 1.0kb downstream 3351 true Chr07: 7667835-7671185 Physcomitrium patens
Pp3c7_11540 1.0kb downstream 1.0kb downstream 1000 false Chr07: 7667835-7668834 Physcomitrium patens
Pp3c7_11540 2.0kb upstream 2.0kb upstream 4351 true Chr07: 7668835-7673185 Physcomitrium patens
Pp3c7_11540 2.0kb upstream 2.0kb upstream 2000 false Chr07: 7671186-7673185 Physcomitrium patens
Pp3c7_11540 2.0kb downstream 2.0kb downstream 4351 true Chr07: 7666835-7671185 Physcomitrium patens
Pp3c7_11540 2.0kb downstream 2.0kb downstream 2000 false Chr07: 7666835-7668834 Physcomitrium patens
Pp3c7_11540 5.0kb upstream 5.0kb upstream 7351 true Chr07: 7668835-7676185 Physcomitrium patens
Pp3c7_11540 5.0kb upstream 5.0kb upstream 5000 false Chr07: 7671186-7676185 Physcomitrium patens
Pp3c7_11540 5.0kb downstream 5.0kb downstream 7351 true Chr07: 7663835-7671185 Physcomitrium patens
Pp3c7_11540 5.0kb downstream 5.0kb downstream 5000 false Chr07: 7663835-7668834 Physcomitrium patens
Pp3c7_11540 10.0kb upstream 10.0kb upstream 12351 true Chr07: 7668835-7681185 Physcomitrium patens
Pp3c7_11540 10.0kb upstream 10.0kb upstream 10000 false Chr07: 7671186-7681185 Physcomitrium patens
Pp3c7_11540 10.0kb downstream 10.0kb downstream 12351 true Chr07: 7658835-7671185 Physcomitrium patens
Pp3c7_11540 10.0kb downstream 10.0kb downstream 10000 false Chr07: 7658835-7668834 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351224 5274 Embryophyte View MSA
123382062 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.028     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain